Variant report

Variant	rs7990852
Chromosome Location	chr13:76704015-76704016
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12583765	0.82[ASN][1000 genomes]
rs17065542	0.81[AMR][1000 genomes]
rs4052613	0.86[AMR][1000 genomes]
rs55780287	0.86[AMR][1000 genomes]
rs56198072	0.81[AMR][1000 genomes]
rs73215675	0.86[AMR][1000 genomes]
rs73215686	0.81[AMR][1000 genomes]
rs73219844	0.81[AMR][1000 genomes]
rs73219852	0.86[AMR][1000 genomes]
rs73224154	0.86[AMR][1000 genomes]
rs7990742	0.86[AMR][1000 genomes]
rs7990902	0.86[AMR][1000 genomes]
rs7997711	1.00[CEU][hapmap];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900580	chr13:76665408-76735400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76703600-76704600	Enhancers	Fetal Muscle Leg	muscle
2	chr13:76704000-76705800	Weak transcription	Fetal Heart	heart
3	chr13:76704000-76705800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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