Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1461980	0.81[EUR][1000 genomes]
rs17065542	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4052613	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4242962	1.00[EUR][1000 genomes]
rs55780287	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56198072	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57076889	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60058668	0.80[EUR][1000 genomes]
rs73215669	1.00[EUR][1000 genomes]
rs73215671	0.84[AFR][1000 genomes]
rs73215673	1.00[EUR][1000 genomes]
rs73215686	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73215696	1.00[EUR][1000 genomes]
rs73215697	1.00[EUR][1000 genomes]
rs73217726	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73219844	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73219846	0.80[EUR][1000 genomes]
rs73219851	0.80[EUR][1000 genomes]
rs73219852	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73224121	0.80[EUR][1000 genomes]
rs73224127	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73224133	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73224154	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7985909	0.94[EUR][1000 genomes]
rs7990742	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7990852	0.86[AMR][1000 genomes]
rs7990902	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7994458	1.00[EUR][1000 genomes]
rs7997711	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9544115	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76589400-76601400	Weak transcription	K562	blood
2	chr13:76594200-76601200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:76594400-76601400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:76597600-76601200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:76598000-76601400	Weak transcription	Fetal Heart	heart

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