Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76444149..76445101-chr13:76593232..76594146,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1381480	0.85[AFR][1000 genomes]
rs1461980	1.00[AMR][1000 genomes]
rs17065542	1.00[EUR][1000 genomes]
rs4052613	0.87[EUR][1000 genomes]
rs4242962	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55780287	0.87[EUR][1000 genomes]
rs56198072	0.94[EUR][1000 genomes]
rs57076889	0.87[EUR][1000 genomes]
rs60058668	0.87[EUR][1000 genomes]
rs73215669	0.94[EUR][1000 genomes]
rs73215673	0.94[EUR][1000 genomes]
rs73215675	0.94[EUR][1000 genomes]
rs73215686	0.94[EUR][1000 genomes]
rs73215696	0.94[EUR][1000 genomes]
rs73215697	0.94[EUR][1000 genomes]
rs73217726	1.00[EUR][1000 genomes]
rs73219844	0.87[EUR][1000 genomes]
rs73219846	0.87[EUR][1000 genomes]
rs73219851	0.87[EUR][1000 genomes]
rs73219852	0.87[EUR][1000 genomes]
rs73224121	0.87[EUR][1000 genomes]
rs73224127	0.87[EUR][1000 genomes]
rs73224133	0.87[EUR][1000 genomes]
rs73224154	0.87[EUR][1000 genomes]
rs7981661	0.83[AFR][1000 genomes]
rs7984890	0.85[AFR][1000 genomes]
rs7990742	1.00[EUR][1000 genomes]
rs7990902	0.89[EUR][1000 genomes]
rs7994458	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7997711	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9544115	1.00[AMR][1000 genomes]
rs9544126	0.85[AFR][1000 genomes]
rs9565224	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76584600-76593800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:76589400-76593800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:76589400-76601400	Weak transcription	K562	blood
4	chr13:76589800-76594000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:76589800-76594800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:76589800-76594800	Weak transcription	HMEC	breast
7	chr13:76589800-76596800	Weak transcription	Fetal Lung	lung
8	chr13:76592600-76593800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:76593200-76595200	Enhancers	Brain Hippocampus Middle	brain
10	chr13:76593200-76595200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr13:76593400-76593800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:76593400-76594000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:76593400-76595200	Enhancers	Brain Angular Gyrus	brain
14	chr13:76593600-76593800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:76593600-76594400	Active TSS	HepG2	liver
16	chr13:76593600-76595200	Enhancers	Brain Substantia Nigra	brain

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