Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76613524..76614133-chr13:77047364..77048499,5	MCF-7	breast:
2	chr13:76613162..76614105-chr13:77047335..77048422,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1461980	0.81[EUR][1000 genomes]
rs17065542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4052613	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4242962	1.00[EUR][1000 genomes]
rs55780287	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56198072	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57076889	0.80[EUR][1000 genomes]
rs60058668	0.80[EUR][1000 genomes]
rs73215669	1.00[EUR][1000 genomes]
rs73215673	1.00[EUR][1000 genomes]
rs73215675	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73215689	0.85[AFR][1000 genomes]
rs73215696	1.00[EUR][1000 genomes]
rs73215697	1.00[EUR][1000 genomes]
rs73217726	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73219844	0.80[EUR][1000 genomes]
rs73219846	0.80[EUR][1000 genomes]
rs73219851	0.80[EUR][1000 genomes]
rs73219852	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73224121	0.80[EUR][1000 genomes]
rs73224127	0.80[EUR][1000 genomes]
rs73224133	0.80[EUR][1000 genomes]
rs73224154	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7985909	0.94[EUR][1000 genomes]
rs7990742	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7990852	0.81[AMR][1000 genomes]
rs7990902	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7994458	1.00[EUR][1000 genomes]
rs7997711	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9544115	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv516991	chr13:76610127-76634901	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv455988	chr13:76610561-76662923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv562363	chr13:76610561-76662923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76609600-76613800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:76613000-76613800	Enhancers	Brain Anterior Caudate	brain
3	chr13:76613400-76613800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:76613600-76613800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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