Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1381480	0.81[AFR][1000 genomes]
rs1461980	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17065542	0.94[EUR][1000 genomes]
rs4052613	0.80[EUR][1000 genomes]
rs4146692	0.84[AFR][1000 genomes]
rs55780287	0.80[EUR][1000 genomes]
rs56198072	1.00[EUR][1000 genomes]
rs57076889	0.80[EUR][1000 genomes]
rs60058668	0.80[EUR][1000 genomes]
rs73215669	1.00[EUR][1000 genomes]
rs73215673	1.00[EUR][1000 genomes]
rs73215675	1.00[EUR][1000 genomes]
rs73215686	1.00[EUR][1000 genomes]
rs73215696	1.00[EUR][1000 genomes]
rs73215697	1.00[EUR][1000 genomes]
rs73217726	0.94[EUR][1000 genomes]
rs73219844	0.80[EUR][1000 genomes]
rs73219846	0.80[EUR][1000 genomes]
rs73219851	0.80[EUR][1000 genomes]
rs73219852	0.80[EUR][1000 genomes]
rs73224121	0.80[EUR][1000 genomes]
rs73224127	0.80[EUR][1000 genomes]
rs73224133	0.80[EUR][1000 genomes]
rs73224154	0.80[EUR][1000 genomes]
rs7981661	0.88[AFR][1000 genomes]
rs7984890	0.81[AFR][1000 genomes]
rs7985909	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7990742	0.94[EUR][1000 genomes]
rs7990902	0.83[EUR][1000 genomes]
rs7994458	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997711	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9544115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9544126	0.81[AFR][1000 genomes]
rs9565224	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76579400-76584600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:76579600-76585800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:76580400-76584400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:76580400-76586200	Weak transcription	Aorta	Aorta
5	chr13:76580400-76588400	Weak transcription	Ovary	ovary
6	chr13:76581200-76586000	Weak transcription	Fetal Heart	heart
7	chr13:76583000-76584200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:76583000-76584200	Enhancers	HSMMtube	muscle
9	chr13:76583000-76584400	Enhancers	HSMM	muscle
10	chr13:76583200-76584600	Enhancers	Fetal Intestine Large	intestine
11	chr13:76583600-76584200	Active TSS	A549	lung
12	chr13:76583800-76588400	Weak transcription	NHLF	lung
13	chr13:76584000-76584200	Enhancers	NH-A	brain

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