Variant report
| Variant | rs7990902 |
|---|---|
| Chromosome Location | chr13:76644024-76644025 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs17065542 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4052613 | 1.00[AMR][1000 genomes] |
| rs4242962 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs55780287 | 1.00[AMR][1000 genomes] |
| rs56198072 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs57076889 | 0.82[AMR][1000 genomes] |
| rs57413197 | 0.86[AFR][1000 genomes] |
| rs73215669 | 0.83[EUR][1000 genomes] |
| rs73215673 | 0.83[EUR][1000 genomes] |
| rs73215675 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73215686 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs73215696 | 0.83[EUR][1000 genomes] |
| rs73215697 | 0.83[EUR][1000 genomes] |
| rs73217726 | 0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73219844 | 0.84[AMR][1000 genomes] |
| rs73219852 | 1.00[AMR][1000 genomes] |
| rs73224127 | 0.82[AMR][1000 genomes] |
| rs73224133 | 0.82[AMR][1000 genomes] |
| rs73224154 | 1.00[AMR][1000 genomes] |
| rs7985909 | 0.89[EUR][1000 genomes] |
| rs7990742 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7990852 | 0.86[AMR][1000 genomes] |
| rs7994458 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs7997711 | 1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832649 | chr13:76424872-76657891 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054431 | chr13:76460431-76885094 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv541837 | chr13:76460431-76885094 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv455988 | chr13:76610561-76662923 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv562363 | chr13:76610561-76662923 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:76643400-76646200 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
