Variant report

Variant	rs73215696
Chromosome Location	chr13:76627461-76627462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1461980	0.81[EUR][1000 genomes]
rs17065542	0.94[EUR][1000 genomes]
rs4052613	0.80[EUR][1000 genomes]
rs4242962	1.00[EUR][1000 genomes]
rs55780287	0.80[EUR][1000 genomes]
rs55877860	0.91[AMR][1000 genomes]
rs56198072	1.00[EUR][1000 genomes]
rs57076889	0.80[EUR][1000 genomes]
rs60058668	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73215669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73215673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73215675	1.00[EUR][1000 genomes]
rs73215686	1.00[EUR][1000 genomes]
rs73215697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73217726	0.94[EUR][1000 genomes]
rs73219844	0.80[EUR][1000 genomes]
rs73219846	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73219851	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73219852	0.80[EUR][1000 genomes]
rs73224121	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73224127	0.80[EUR][1000 genomes]
rs73224133	0.80[EUR][1000 genomes]
rs73224154	0.80[EUR][1000 genomes]
rs73231848	0.91[AMR][1000 genomes]
rs73231854	0.91[AMR][1000 genomes]
rs7985909	0.94[EUR][1000 genomes]
rs7990742	0.94[EUR][1000 genomes]
rs7990902	0.83[EUR][1000 genomes]
rs7994458	1.00[EUR][1000 genomes]
rs7997711	0.80[EUR][1000 genomes]
rs9544115	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv516991	chr13:76610127-76634901	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv455988	chr13:76610561-76662923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv562363	chr13:76610561-76662923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76627200-76627800	Enhancers	HMEC	breast
2	chr13:76627200-76629000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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