Variant report

Variant	rs7998299
Chromosome Location	chr13:90341498-90341499
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16943209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73593561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588765	1.00[AMR][1000 genomes]
rs9588768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1038982	chr13:90199563-90345091	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv456059	chr13:90276827-90355675	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv562640	chr13:90276827-90355675	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1038484	chr13:90288352-90399591	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900865	chr13:90289165-90432585	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv456060	chr13:90309159-90392614	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv562641	chr13:90309159-90392614	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900866	chr13:90325420-90432585	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv900867	chr13:90338898-90432585	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90340800-90341600	Active TSS	Brain Anterior Caudate	brain
2	chr13:90340800-90341600	Flanking Active TSS	Brain Substantia Nigra	brain
3	chr13:90340800-90341600	Enhancers	Fetal Heart	heart
4	chr13:90340800-90342200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr13:90341000-90341600	Enhancers	Right Atrium	heart
6	chr13:90341000-90341600	Enhancers	Right Ventricle	heart
7	chr13:90341000-90341800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:90341000-90341800	Enhancers	Colon Smooth Muscle	Colon
9	chr13:90341000-90342400	Enhancers	Brain Angular Gyrus	brain
10	chr13:90341000-90342400	Enhancers	Brain Hippocampus Middle	brain
11	chr13:90341200-90341600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:90341200-90341600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr13:90341200-90341600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:90341200-90341600	Enhancers	Adipose Nuclei	Adipose
15	chr13:90341200-90341800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:90341200-90342000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:90341400-90341800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr13:90341400-90341800	Flanking Active TSS	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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