Variant report

Variant	rs8016589
Chromosome Location	chr14:69820568-69820569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69800242..69802795-chr14:69820027..69823716,5	MCF-7	breast:
2	chr14:69819465..69821642-chr14:69923369..69926196,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1275672	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17836204	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232057	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232058	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296721	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs45552031	0.85[AFR][1000 genomes]
rs7140358	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145903	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152886	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158020	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007612	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013221	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014284	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015357	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016546	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021143	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456334	chr14:69793624-69831037	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564966	chr14:69793624-69831037	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69793400-69821200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:69793400-69822600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:69800800-69821800	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:69803400-69820800	Weak transcription	Esophagus	oesophagus
5	chr14:69807000-69821000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:69808600-69821600	Weak transcription	Brain Anterior Caudate	brain
7	chr14:69809800-69822800	Weak transcription	Right Atrium	heart
8	chr14:69810200-69821600	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:69810200-69822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:69812200-69821600	Weak transcription	Aorta	Aorta
11	chr14:69813400-69821000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:69815400-69821200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:69815600-69821200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:69815600-69838800	Weak transcription	Brain Germinal Matrix	brain
15	chr14:69816400-69821800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr14:69816400-69822200	Weak transcription	Right Ventricle	heart
17	chr14:69817200-69821800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:69817600-69822600	Weak transcription	Fetal Stomach	stomach
19	chr14:69817600-69823000	Enhancers	Primary B cells from peripheral blood	blood
20	chr14:69817800-69821000	Enhancers	GM12878-XiMat	blood
21	chr14:69818200-69820600	Weak transcription	Fetal Thymus	thymus
22	chr14:69818200-69820800	Strong transcription	Fetal Intestine Small	intestine
23	chr14:69818200-69821800	Weak transcription	Adipose Nuclei	Adipose
24	chr14:69818400-69821200	Genic enhancers	Fetal Muscle Trunk	muscle
25	chr14:69818400-69822200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:69818400-69827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:69818800-69821000	Strong transcription	Fetal Brain Female	brain
29	chr14:69819000-69821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:69819000-69822400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:69819200-69822400	Weak transcription	Left Ventricle	heart
32	chr14:69819400-69820600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:69819400-69820600	Weak transcription	Spleen	Spleen
34	chr14:69819400-69820800	Weak transcription	Fetal Muscle Leg	muscle
35	chr14:69819600-69821000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:69819800-69820600	Enhancers	Brain Cingulate Gyrus	brain
37	chr14:69820400-69820600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:69820400-69821000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:69820400-69821000	Enhancers	Duodenum Mucosa	Duodenum
40	chr14:69820400-69823000	Enhancers	Primary B cells from cord blood	blood

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