Variant report

Variant	rs807687
Chromosome Location	chr6:24309519-24309520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4712820	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs707861	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs707863	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs707864	0.85[EUR][1000 genomes]
rs707865	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs707866	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs707867	0.85[EUR][1000 genomes]
rs707868	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs707869	0.86[EUR][1000 genomes]
rs807685	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs807686	0.86[EUR][1000 genomes]
rs807688	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs807690	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs807691	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs807692	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24303000-24310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24308400-24313600	Weak transcription	Fetal Kidney	kidney
4	chr6:24308400-24313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:24308600-24309800	Weak transcription	A549	lung
6	chr6:24308600-24311000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:24308600-24311200	Weak transcription	HSMMtube	muscle
8	chr6:24308600-24311800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:24309400-24310800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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