Variant report

Variant	rs807685
Chromosome Location	chr6:24310644-24310645
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24309301..24311171-chr6:24355613..24358266,2	MCF-7	breast:
2	chr6:24301531..24305214-chr6:24307233..24312896,5	K562	blood:

Variant related genes	Relation type
ENSG00000146038	Chromatin interaction
ENSG00000146049	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12110558	1.00[ASN][1000 genomes]
rs12111422	1.00[ASN][1000 genomes]
rs16889038	1.00[ASN][1000 genomes]
rs16889066	1.00[ASN][1000 genomes]
rs2066215	1.00[ASN][1000 genomes]
rs3843516	1.00[ASN][1000 genomes]
rs4712820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703909	1.00[ASN][1000 genomes]
rs61209944	1.00[ASN][1000 genomes]
rs62400388	1.00[ASN][1000 genomes]
rs62400408	1.00[ASN][1000 genomes]
rs62400409	1.00[ASN][1000 genomes]
rs62400419	1.00[ASN][1000 genomes]
rs6911191	1.00[ASN][1000 genomes]
rs6912221	1.00[ASN][1000 genomes]
rs6917481	1.00[ASN][1000 genomes]
rs707861	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707864	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707865	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707867	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707868	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707869	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833033	1.00[ASN][1000 genomes]
rs72833035	1.00[ASN][1000 genomes]
rs73396035	1.00[ASN][1000 genomes]
rs7753708	1.00[ASN][1000 genomes]
rs7753917	1.00[ASN][1000 genomes]
rs807686	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807687	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs807688	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807690	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807704	1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24308400-24313600	Weak transcription	Fetal Kidney	kidney
3	chr6:24308400-24313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:24308600-24311000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:24308600-24311200	Weak transcription	HSMMtube	muscle
6	chr6:24308600-24311800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:24309400-24310800	Weak transcription	HepG2	liver
8	chr6:24309800-24312800	Enhancers	A549	lung

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