Variant report

Variant	rs3843516
Chromosome Location	chr6:24305673-24305674
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24300610..24302658-chr6:24304913..24307230,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12110558	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111422	1.00[ASN][1000 genomes]
rs16889038	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066215	1.00[ASN][1000 genomes]
rs4712820	1.00[ASN][1000 genomes]
rs57703909	1.00[ASN][1000 genomes]
rs60953408	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61209944	1.00[ASN][1000 genomes]
rs62400388	1.00[ASN][1000 genomes]
rs62400408	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400409	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400419	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911191	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912221	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917481	1.00[ASN][1000 genomes]
rs707861	1.00[ASN][1000 genomes]
rs707863	1.00[ASN][1000 genomes]
rs707864	1.00[ASN][1000 genomes]
rs707865	1.00[ASN][1000 genomes]
rs707866	1.00[ASN][1000 genomes]
rs707867	1.00[ASN][1000 genomes]
rs707868	1.00[ASN][1000 genomes]
rs707869	1.00[ASN][1000 genomes]
rs72833033	1.00[ASN][1000 genomes]
rs72833035	1.00[ASN][1000 genomes]
rs73396035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753708	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753917	1.00[ASN][1000 genomes]
rs807685	1.00[ASN][1000 genomes]
rs807686	1.00[ASN][1000 genomes]
rs807688	1.00[ASN][1000 genomes]
rs807690	1.00[ASN][1000 genomes]
rs807691	1.00[ASN][1000 genomes]
rs807692	1.00[ASN][1000 genomes]
rs807704	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24297800-24308000	Weak transcription	Fetal Kidney	kidney
3	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:24302400-24307800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:24302600-24307800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:24302600-24308000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:24303000-24310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:24303200-24306200	Weak transcription	A549	lung
9	chr6:24303200-24308000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:24303800-24306400	Weak transcription	HepG2	liver
11	chr6:24304000-24308000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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