Variant report

Variant	rs16889066
Chromosome Location	chr6:24312954-24312955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24312848..24315658-chr6:24411529..24413193,2	K562	blood:
2	chr6:24312577..24316019-chr6:24320665..24323632,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12110558	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111422	1.00[ASN][1000 genomes]
rs16889038	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066215	1.00[ASN][1000 genomes]
rs3843516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712820	1.00[ASN][1000 genomes]
rs57703909	1.00[ASN][1000 genomes]
rs60953408	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61209944	1.00[ASN][1000 genomes]
rs62400388	1.00[ASN][1000 genomes]
rs62400408	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400409	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400419	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911191	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912221	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917481	1.00[ASN][1000 genomes]
rs707861	1.00[ASN][1000 genomes]
rs707863	1.00[ASN][1000 genomes]
rs707864	1.00[ASN][1000 genomes]
rs707865	1.00[ASN][1000 genomes]
rs707866	1.00[ASN][1000 genomes]
rs707867	1.00[ASN][1000 genomes]
rs707868	1.00[ASN][1000 genomes]
rs707869	1.00[ASN][1000 genomes]
rs72833033	1.00[ASN][1000 genomes]
rs72833035	1.00[ASN][1000 genomes]
rs73396035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753708	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753917	1.00[ASN][1000 genomes]
rs807685	1.00[ASN][1000 genomes]
rs807686	1.00[ASN][1000 genomes]
rs807688	1.00[ASN][1000 genomes]
rs807690	1.00[ASN][1000 genomes]
rs807691	1.00[ASN][1000 genomes]
rs807692	1.00[ASN][1000 genomes]
rs807704	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16889066	ALDH5A1	cis	lymphoblastoid	seeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24308400-24313600	Weak transcription	Fetal Kidney	kidney
2	chr6:24308400-24313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:24312000-24313800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:24312200-24313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:24312200-24314000	Weak transcription	HSMMtube	muscle
6	chr6:24312400-24313800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:24312600-24313800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:24312600-24313800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:24312600-24314000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:24312800-24313000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:24312800-24313000	Enhancers	Fetal Intestine Large	intestine
12	chr6:24312800-24313200	Flanking Active TSS	A549	lung
13	chr6:24312800-24313600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:24312800-24313800	Enhancers	HepG2	liver
15	chr6:24312800-24314200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr6:24312800-24314200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:24312800-24314400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:24312800-24314400	Enhancers	NH-A	brain

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