Variant report

Variant	rs62400409
Chromosome Location	chr6:24286169-24286170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:27975663..27977843-chr6:24284070..24286827,2	MCF-7	breast:
2	chr6:24284945..24286564-chr6:24287420..24288953,2	MCF-7	breast:
3	chr6:24284969..24286871-chr6:24287249..24289411,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12110558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111422	1.00[ASN][1000 genomes]
rs16889038	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889066	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066215	1.00[ASN][1000 genomes]
rs3804327	0.96[AFR][1000 genomes]
rs3843516	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712820	1.00[ASN][1000 genomes]
rs57703909	1.00[ASN][1000 genomes]
rs60953408	0.87[EUR][1000 genomes]
rs61209944	1.00[ASN][1000 genomes]
rs62400388	1.00[ASN][1000 genomes]
rs62400408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400411	0.84[AFR][1000 genomes]
rs62400414	0.85[AFR][1000 genomes]
rs62400419	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917481	1.00[ASN][1000 genomes]
rs707861	1.00[ASN][1000 genomes]
rs707863	1.00[ASN][1000 genomes]
rs707864	1.00[ASN][1000 genomes]
rs707865	1.00[ASN][1000 genomes]
rs707866	1.00[ASN][1000 genomes]
rs707867	1.00[ASN][1000 genomes]
rs707868	1.00[ASN][1000 genomes]
rs707869	1.00[ASN][1000 genomes]
rs72833033	1.00[ASN][1000 genomes]
rs72833035	1.00[ASN][1000 genomes]
rs73396035	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753917	1.00[ASN][1000 genomes]
rs807685	1.00[ASN][1000 genomes]
rs807686	1.00[ASN][1000 genomes]
rs807688	1.00[ASN][1000 genomes]
rs807690	1.00[ASN][1000 genomes]
rs807691	1.00[ASN][1000 genomes]
rs807692	1.00[ASN][1000 genomes]
rs807704	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284000-24287000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:24284000-24288400	Weak transcription	Spleen	Spleen
3	chr6:24284200-24292000	Weak transcription	Fetal Intestine Large	intestine
4	chr6:24284200-24294200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24284400-24286400	Weak transcription	Fetal Kidney	kidney
6	chr6:24284600-24287000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:24284600-24292000	Weak transcription	A549	lung
8	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
9	chr6:24284800-24286800	Strong transcription	HepG2	liver
10	chr6:24285000-24287800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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