Variant report

Variant	rs707868
Chromosome Location	chr6:24307192-24307193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24300610..24302658-chr6:24304913..24307230,2	K562	blood:
2	chr6:24283548..24284090-chr6:24306542..24307531,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12110558	1.00[ASN][1000 genomes]
rs12111422	1.00[ASN][1000 genomes]
rs16889038	1.00[ASN][1000 genomes]
rs16889066	1.00[ASN][1000 genomes]
rs2066215	1.00[ASN][1000 genomes]
rs3843516	1.00[ASN][1000 genomes]
rs4712820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57703909	1.00[ASN][1000 genomes]
rs61209944	1.00[ASN][1000 genomes]
rs62400388	1.00[ASN][1000 genomes]
rs62400408	1.00[ASN][1000 genomes]
rs62400409	1.00[ASN][1000 genomes]
rs62400419	1.00[ASN][1000 genomes]
rs6911191	1.00[ASN][1000 genomes]
rs6912221	1.00[ASN][1000 genomes]
rs6917481	1.00[ASN][1000 genomes]
rs707861	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707863	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707864	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707865	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707866	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707867	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs707869	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833033	1.00[ASN][1000 genomes]
rs72833035	1.00[ASN][1000 genomes]
rs73396035	1.00[ASN][1000 genomes]
rs7753708	1.00[ASN][1000 genomes]
rs7753917	1.00[ASN][1000 genomes]
rs807685	0.84[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807686	0.84[CEU][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807687	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs807688	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807691	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807692	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807704	1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24297800-24308000	Weak transcription	Fetal Kidney	kidney
3	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:24302400-24307800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:24302600-24307800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:24302600-24308000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:24303000-24310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:24303200-24308000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:24304000-24308000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:24306200-24308600	Enhancers	A549	lung
11	chr6:24306400-24308200	Enhancers	HepG2	liver
12	chr6:24306600-24308000	Weak transcription	HSMMtube	muscle

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