Variant report

Variant	rs8191055
Chromosome Location	chr16:82069588-82069589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11542462	1.00[ASN][1000 genomes]
rs11859107	1.00[ASN][1000 genomes]
rs11860917	1.00[ASN][1000 genomes]
rs11864701	1.00[ASN][1000 genomes]
rs34375324	1.00[ASN][1000 genomes]
rs41305765	1.00[ASN][1000 genomes]
rs58227801	1.00[ASN][1000 genomes]
rs62044875	1.00[ASN][1000 genomes]
rs62044876	1.00[ASN][1000 genomes]
rs62044878	1.00[ASN][1000 genomes]
rs62044879	1.00[ASN][1000 genomes]
rs8191241	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82067000-82070000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:82067400-82069600	Weak transcription	Small Intestine	intestine
3	chr16:82067400-82077000	Weak transcription	Right Atrium	heart
4	chr16:82068000-82072800	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr16:82068200-82071600	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr16:82068400-82070200	Active TSS	Colonic Mucosa	Colon
7	chr16:82068600-82070800	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr16:82068600-82071600	Active TSS	Fetal Intestine Large	intestine
9	chr16:82068600-82071600	Active TSS	Fetal Intestine Small	intestine
10	chr16:82068600-82071800	Active TSS	Liver	Liver
11	chr16:82068600-82072000	Active TSS	Duodenum Mucosa	Duodenum
12	chr16:82068600-82072600	Active TSS	Placenta	Placenta
13	chr16:82068800-82069800	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr16:82068800-82070400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr16:82068800-82070800	Active TSS	Pancreas	Pancrea
16	chr16:82068800-82070800	Active TSS	Rectal Smooth Muscle	rectum
17	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr16:82069000-82069600	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
19	chr16:82069000-82069800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr16:82069000-82070800	Active TSS	Muscle Satellite Cultured Cells	--
21	chr16:82069200-82070000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr16:82069200-82070400	Active TSS	NHLF	lung
23	chr16:82069200-82070600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr16:82069200-82070800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr16:82069200-82070800	Active TSS	Fetal Stomach	stomach
26	chr16:82069200-82074000	Weak transcription	Fetal Lung	lung
27	chr16:82069200-82076600	Weak transcription	HSMMtube	muscle
28	chr16:82069200-82077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr16:82069400-82069600	Active TSS	Fetal Kidney	kidney
30	chr16:82069400-82069800	Weak transcription	Gastric	stomach
31	chr16:82069400-82069800	Flanking Active TSS	HUVEC	blood vessel
32	chr16:82069400-82070000	Active TSS	Stomach Mucosa	stomach
33	chr16:82069400-82070000	Bivalent/Poised TSS	HepG2	liver
34	chr16:82069400-82070200	Active TSS	NH-A	brain
35	chr16:82069400-82070400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr16:82069400-82075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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