The 2.0 version of rSNPBase

Variant report

Variant rs58227801
Chromosome Location chr16:81942435-81942436
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:81902800-81955600 Weak transcription Fetal Kidney kidney
2 chr16:81905800-81943000 Weak transcription Small Intestine intestine
3 chr16:81908400-81950000 Strong transcription GM12878-XiMat blood
4 chr16:81908400-81950200 Strong transcription Primary B cells from peripheral blood blood
5 chr16:81909400-81961800 Strong transcription Primary neutrophils fromperipheralblood blood
6 chr16:81920400-81982000 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr16:81922400-81944800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
8 chr16:81924400-81946200 Weak transcription H1 Cell Line embryonic stem cell
9 chr16:81924400-81961600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
10 chr16:81924400-81970000 Weak transcription Fetal Intestine Large intestine
11 chr16:81924800-81949200 Strong transcription Breast Myoepithelial Primary Cells Breast
12 chr16:81925400-81949200 Weak transcription Right Ventricle heart
13 chr16:81925800-81992600 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr16:81926200-81942600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr16:81928000-81953200 Weak transcription Fetal Thymus thymus
16 chr16:81930800-81953400 Weak transcription Primary T cells fromperipheralblood blood
17 chr16:81931000-81949800 Strong transcription Liver Liver
18 chr16:81933000-81983600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr16:81934600-81961200 Weak transcription Colonic Mucosa Colon
20 chr16:81934800-81945000 Weak transcription Thymus Thymus
21 chr16:81934800-81971600 Weak transcription Right Atrium heart
22 chr16:81935000-81953000 Weak transcription Adipose Nuclei Adipose
23 chr16:81936000-81943400 Strong transcription Fetal Adrenal Gland Adrenal Gland
24 chr16:81936000-81982000 Weak transcription Gastric stomach
25 chr16:81936000-81984600 Strong transcription Primary monocytes fromperipheralblood blood
26 chr16:81936400-81949400 Strong transcription Primary hematopoietic stem cells short term culture blood
27 chr16:81936600-81944800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr16:81936800-81949400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr16:81936800-81951000 Strong transcription Primary B cells from cord blood blood
30 chr16:81937000-81969800 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr16:81937200-81955000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr16:81938200-81946200 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr16:81938600-81946400 Weak transcription Pancreas Pancrea
34 chr16:81939400-81944000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr16:81941200-81944600 Strong transcription Spleen Spleen
36 chr16:81941400-81943600 Strong transcription Primary hematopoietic stem cells blood
37 chr16:81941600-81966000 Weak transcription Placenta Placenta
38 chr16:81941800-81943600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr16:81941800-81946200 Weak transcription Fetal Intestine Small intestine
40 chr16:81941800-81947000 Weak transcription Fetal Stomach stomach
41 chr16:81942000-81943000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr16:81942000-81943000 Flanking Active TSS NHEK skin
43 chr16:81942000-81948000 Weak transcription Esophagus oesophagus
44 chr16:81942400-81942600 Flanking Active TSS HMEC breast
45 chr16:81942400-81942800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr16:81942400-81944000 Weak transcription Lung lung
47 chr16:81942400-81946000 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015