Variant report

Variant	rs62046681
Chromosome Location	chr16:81898715-81898716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81898588..81900503-chr16:81902752..81904283,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11859107	1.00[ASN][1000 genomes]
rs11859176	1.00[ASN][1000 genomes]
rs11860342	1.00[ASN][1000 genomes]
rs11860917	1.00[ASN][1000 genomes]
rs11863870	1.00[ASN][1000 genomes]
rs11864701	1.00[ASN][1000 genomes]
rs12927930	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13333348	1.00[ASN][1000 genomes]
rs13333716	1.00[ASN][1000 genomes]
rs28520093	1.00[ASN][1000 genomes]
rs41305761	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41305765	1.00[ASN][1000 genomes]
rs55678733	1.00[ASN][1000 genomes]
rs55791328	1.00[ASN][1000 genomes]
rs55801253	1.00[ASN][1000 genomes]
rs56047457	1.00[ASN][1000 genomes]
rs56397554	1.00[ASN][1000 genomes]
rs58227801	1.00[ASN][1000 genomes]
rs58737360	1.00[ASN][1000 genomes]
rs59773113	1.00[ASN][1000 genomes]
rs62043995	1.00[ASN][1000 genomes]
rs62043999	1.00[ASN][1000 genomes]
rs62044000	1.00[ASN][1000 genomes]
rs62044001	1.00[ASN][1000 genomes]
rs62044874	1.00[ASN][1000 genomes]
rs62044875	1.00[ASN][1000 genomes]
rs62044876	1.00[ASN][1000 genomes]
rs62044878	1.00[ASN][1000 genomes]
rs62044879	1.00[ASN][1000 genomes]
rs62046676	1.00[ASN][1000 genomes]
rs62046679	1.00[ASN][1000 genomes]
rs62046759	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62047363	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62047364	1.00[ASN][1000 genomes]
rs62047369	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67157120	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201677	1.00[ASN][1000 genomes]
rs8062633	1.00[ASN][1000 genomes]
rs9674372	1.00[ASN][1000 genomes]
rs9928597	1.00[ASN][1000 genomes]
rs9930679	1.00[ASN][1000 genomes]
rs9936650	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81880000-81911200	Weak transcription	Pancreas	Pancrea
3	chr16:81880400-81908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:81887600-81901800	Weak transcription	Fetal Kidney	kidney
5	chr16:81887800-81899000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr16:81892000-81900600	Weak transcription	Thymus	Thymus
7	chr16:81894400-81900400	Weak transcription	Liver	Liver
8	chr16:81894800-81912400	Weak transcription	Fetal Intestine Small	intestine
9	chr16:81895800-81902600	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr16:81896000-81900800	Weak transcription	Esophagus	oesophagus
11	chr16:81896200-81900000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr16:81896400-81900000	Weak transcription	HUVEC	blood vessel
13	chr16:81896400-81902400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:81896800-81910400	Weak transcription	Gastric	stomach
15	chr16:81897000-81899200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr16:81897200-81898800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr16:81897200-81898800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr16:81897200-81899000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:81897200-81899000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr16:81897200-81899000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr16:81897200-81899000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr16:81897200-81899000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr16:81897200-81899200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr16:81897200-81899200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr16:81897200-81899400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr16:81897400-81899000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr16:81897400-81901800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr16:81897600-81898800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr16:81897600-81898800	Enhancers	Duodenum Mucosa	Duodenum
30	chr16:81897600-81902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr16:81897600-81902200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr16:81897600-81902600	Genic enhancers	GM12878-XiMat	blood
33	chr16:81897800-81899000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr16:81897800-81899200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr16:81897800-81899400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr16:81898000-81898800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr16:81898000-81899000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr16:81898200-81899200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr16:81898200-81899400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr16:81898400-81898800	Bivalent Enhancer	Placenta	Placenta
41	chr16:81898400-81898800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
42	chr16:81898400-81899000	Enhancers	Right Ventricle	heart
43	chr16:81898400-81899200	Enhancers	Adipose Nuclei	Adipose
44	chr16:81898400-81900600	Enhancers	Primary B cells from cord blood	blood
45	chr16:81898600-81898800	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr16:81898600-81898800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr16:81898600-81898800	Bivalent Enhancer	Colonic Mucosa	Colon
48	chr16:81898600-81898800	Enhancers	Left Ventricle	heart
49	chr16:81898600-81898800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr16:81898600-81898800	Genic enhancers	Right Atrium	heart

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