The 2.0 version of rSNPBase

Variant report

Variant rs11542462
Chromosome Location chr16:82033810-82033811
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:82023600-82036600 Weak transcription Fetal Kidney kidney
2 chr16:82027400-82044200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr16:82027800-82041600 Strong transcription Primary T cells from cord blood blood
4 chr16:82029400-82041400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr16:82030000-82034000 Strong transcription Thymus Thymus
6 chr16:82030000-82034800 Strong transcription Primary T cells fromperipheralblood blood
7 chr16:82030000-82035000 Weak transcription GM12878-XiMat blood
8 chr16:82030000-82044000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr16:82030200-82034200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
10 chr16:82030200-82034800 Strong transcription Primary T helper naive cells fromperipheralblood blood
11 chr16:82030200-82034800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr16:82030600-82037800 Weak transcription Aorta Aorta
13 chr16:82030600-82044200 Weak transcription Small Intestine intestine
14 chr16:82030800-82034800 Weak transcription Fetal Muscle Trunk muscle
15 chr16:82030800-82042400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr16:82031000-82044400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr16:82031200-82038600 Strong transcription Duodenum Mucosa Duodenum
18 chr16:82031400-82034000 Strong transcription Primary B cells from peripheral blood blood
19 chr16:82031400-82034000 Strong transcription Fetal Thymus thymus
20 chr16:82031400-82034600 Strong transcription Liver Liver
21 chr16:82031400-82035000 Strong transcription Primary T helper cells fromperipheralblood blood
22 chr16:82031600-82034200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
23 chr16:82031600-82034200 Strong transcription Primary T regulatory cells fromperipheralblood blood
24 chr16:82031600-82034200 Strong transcription Gastric stomach
25 chr16:82031600-82034800 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr16:82031800-82034000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr16:82031800-82034400 Weak transcription Osteobl bone
28 chr16:82031800-82034600 Strong transcription Primary T helper cells PMA-I stimulated --
29 chr16:82032000-82034800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr16:82032000-82038000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr16:82032000-82038400 Strong transcription Fetal Intestine Large intestine
32 chr16:82032000-82043400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr16:82032000-82044400 Weak transcription Colon Smooth Muscle Colon
34 chr16:82032000-82044400 Weak transcription Placenta Amnion Placenta Amnion
35 chr16:82032200-82034000 Strong transcription Fetal Intestine Small intestine
36 chr16:82032200-82034000 Strong transcription Pancreas Pancrea
37 chr16:82032200-82034000 Strong transcription Rectal Mucosa Donor 31 rectum
38 chr16:82032200-82034400 Strong transcription HMEC breast
39 chr16:82032200-82039200 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr16:82032200-82039400 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr16:82032200-82042400 Weak transcription Rectal Smooth Muscle rectum
42 chr16:82032200-82042600 Weak transcription A549 lung
43 chr16:82032400-82044400 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr16:82032600-82034600 Weak transcription Fetal Muscle Leg muscle
45 chr16:82032800-82034000 Strong transcription Fetal Stomach stomach
46 chr16:82032800-82035000 Strong transcription NHEK skin
47 chr16:82033000-82042400 Weak transcription Primary hematopoietic stem cells blood
48 chr16:82033200-82034000 Strong transcription Primary B cells from cord blood blood
49 chr16:82033600-82034000 Strong transcription Primary T killer naive cells fromperipheralblood blood
50 chr16:82033600-82036000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015