Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155683357..155685031-chr3:155687240..155689323,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11927551	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1516500	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1685752	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1711083	0.81[CEU][hapmap]
rs358702	0.82[JPT][hapmap]
rs6441017	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs6441026	0.81[CEU][hapmap]
rs701112	0.94[ASN][1000 genomes]
rs819834	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs819835	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs819836	0.96[ASN][1000 genomes]
rs819838	0.94[ASN][1000 genomes]
rs819841	0.93[ASN][1000 genomes]
rs819842	0.93[ASN][1000 genomes]
rs819843	0.93[ASN][1000 genomes]
rs819856	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs819868	0.91[CEU][hapmap]
rs847799	0.88[ASN][1000 genomes]
rs864716	0.93[ASN][1000 genomes]
rs9840456	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	esv3386510	chr3:155688296-155688700	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155688000-155688600	Enhancers	Hela-S3	cervix
2	chr3:155688200-155689000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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