Variant report

Variant	rs823959
Chromosome Location	chr3:135049723-135049724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1069511	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1069512	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1069513	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1069514	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1069515	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1358238	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373816	0.83[ASN][1000 genomes]
rs1405488	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1661460	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1661471	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1664131	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1725996	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56220631	0.83[ASN][1000 genomes]
rs62271916	0.83[ASN][1000 genomes]
rs62271917	0.83[ASN][1000 genomes]
rs62295230	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62295233	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs711923	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs711924	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs711925	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs711935	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs711937	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs711942	0.80[EUR][1000 genomes]
rs823953	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs823966	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs823967	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs823969	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs823972	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs844024	0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs823959	HEY2	trans	cerebellum	SCAN
rs823959	TOPBP1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135048000-135049800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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