Variant report
| Variant | rs1373816 |
|---|---|
| Chromosome Location | chr3:135026162-135026163 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:135024520..135026628-chr3:135027362..135031114,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1069511 | 0.91[ASN][1000 genomes] |
| rs1069513 | 0.91[ASN][1000 genomes] |
| rs1069514 | 0.91[ASN][1000 genomes] |
| rs1069515 | 0.91[ASN][1000 genomes] |
| rs13067054 | 0.83[ASN][1000 genomes] |
| rs1358238 | 0.83[ASN][1000 genomes] |
| rs1373815 | 0.83[ASN][1000 genomes] |
| rs1405488 | 0.83[ASN][1000 genomes] |
| rs1661460 | 0.91[ASN][1000 genomes] |
| rs1661471 | 0.83[ASN][1000 genomes] |
| rs1664131 | 0.83[ASN][1000 genomes] |
| rs1725996 | 0.91[ASN][1000 genomes] |
| rs56220631 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62271916 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62271917 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62295230 | 0.83[ASN][1000 genomes] |
| rs62295233 | 0.83[ASN][1000 genomes] |
| rs711923 | 0.83[ASN][1000 genomes] |
| rs711924 | 0.91[ASN][1000 genomes] |
| rs711925 | 0.91[ASN][1000 genomes] |
| rs711935 | 0.83[ASN][1000 genomes] |
| rs711937 | 0.91[ASN][1000 genomes] |
| rs711942 | 0.83[ASN][1000 genomes] |
| rs823953 | 0.83[ASN][1000 genomes] |
| rs823959 | 0.83[ASN][1000 genomes] |
| rs823966 | 0.91[ASN][1000 genomes] |
| rs823967 | 0.91[ASN][1000 genomes] |
| rs823969 | 0.91[ASN][1000 genomes] |
| rs823972 | 0.83[ASN][1000 genomes] |
| rs824074 | 0.83[ASN][1000 genomes] |
| rs844024 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs983851 | 0.83[ASN][1000 genomes] |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1373816 | TMEM22 | cis | parietal | SCAN |
| rs1373816 | TOPBP1 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:135026000-135026600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
