Variant report

Variant	rs836237
Chromosome Location	chr2:231406680-231406681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1102957	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1104327	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13000851	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1649876	0.95[EUR][1000 genomes]
rs1649902	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1649905	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1649906	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1649907	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1649908	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1649909	0.96[EUR][1000 genomes]
rs1649910	0.90[EUR][1000 genomes]
rs1649921	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1649925	0.95[EUR][1000 genomes]
rs1678151	0.95[EUR][1000 genomes]
rs1678187	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1678189	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1678190	0.91[EUR][1000 genomes]
rs1678199	0.92[EUR][1000 genomes]
rs1678205	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1678210	0.94[EUR][1000 genomes]
rs1678211	0.95[EUR][1000 genomes]
rs2195196	0.98[EUR][1000 genomes]
rs2219811	0.92[CEU][hapmap]
rs2434050	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33078	0.95[EUR][1000 genomes]
rs33079	0.95[EUR][1000 genomes]
rs4973324	0.91[EUR][1000 genomes]
rs4973325	0.95[EUR][1000 genomes]
rs62195461	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6436942	0.84[EUR][1000 genomes]
rs6436944	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs6436945	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs6717269	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6724975	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6740016	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs699660	0.96[EUR][1000 genomes]
rs699661	0.96[EUR][1000 genomes]
rs836232	0.92[EUR][1000 genomes]
rs836236	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs836238	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs836239	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs890668	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875948	chr2:231380697-231420401	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv584673	chr2:231385231-231433237	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231371000-231409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:231390600-231408200	Weak transcription	Esophagus	oesophagus
3	chr2:231390800-231409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:231401000-231430200	Weak transcription	Pancreas	Pancrea
5	chr2:231401400-231408600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:231401800-231409200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:231403200-231410200	Strong transcription	Primary B cells from cord blood	blood
8	chr2:231403600-231407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:231403600-231408600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:231403800-231406800	Strong transcription	Ovary	ovary
11	chr2:231403800-231408800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr2:231403800-231409600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:231404000-231406800	ZNF genes & repeats	Aorta	Aorta
14	chr2:231404000-231406800	Strong transcription	Spleen	Spleen
15	chr2:231404000-231407200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr2:231404000-231407200	Strong transcription	Left Ventricle	heart
17	chr2:231404000-231408400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr2:231404000-231409000	Strong transcription	Primary T cells from cord blood	blood
19	chr2:231404000-231409000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr2:231404000-231417200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr2:231404200-231409000	Strong transcription	Adipose Nuclei	Adipose
22	chr2:231404200-231409200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr2:231404200-231409400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:231404200-231409600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:231404200-231410200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr2:231404400-231408400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr2:231404400-231408400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:231404400-231409800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr2:231404400-231410000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:231404600-231409000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr2:231404600-231416400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:231404800-231408800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr2:231404800-231410800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:231405000-231409800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr2:231405200-231406800	Strong transcription	Fetal Muscle Leg	muscle
36	chr2:231405200-231407200	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:231405200-231407600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr2:231405200-231408800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr2:231405400-231409800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:231405400-231411600	Weak transcription	Placenta	Placenta
41	chr2:231405400-231411800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr2:231405600-231406800	Strong transcription	Lung	lung
43	chr2:231405600-231406800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
44	chr2:231405600-231407000	Strong transcription	Rectal Smooth Muscle	rectum
45	chr2:231405600-231408400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr2:231405600-231408600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:231405600-231408800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr2:231405600-231409000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:231405600-231409000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr2:231405600-231410200	Strong transcription	Primary hematopoietic stem cells	blood

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