The 2.0 version of rSNPBase

Variant report

Variant rs838559
Chromosome Location chr2:234395654-234395655
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:234343000-234402200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
2 chr2:234364000-234411200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr2:234373000-234409800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr2:234373800-234404400 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr2:234375400-234411200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr2:234377800-234397200 Weak transcription Small Intestine intestine
7 chr2:234381600-234399600 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr2:234383400-234400200 Strong transcription Fetal Intestine Small intestine
9 chr2:234384000-234412400 Weak transcription Fetal Heart heart
10 chr2:234384400-234398200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr2:234384400-234402200 Strong transcription Rectal Mucosa Donor 29 rectum
12 chr2:234384400-234402600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr2:234384600-234408400 Strong transcription Duodenum Mucosa Duodenum
14 chr2:234386000-234397600 Weak transcription Brain Germinal Matrix brain
15 chr2:234386600-234400800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr2:234386800-234407800 Strong transcription Fetal Intestine Large intestine
17 chr2:234387200-234396600 Weak transcription Psoas Muscle Psoas
18 chr2:234387400-234402800 Strong transcription Adipose Nuclei Adipose
19 chr2:234387400-234466000 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr2:234387600-234396400 Weak transcription Primary B cells from cord blood blood
21 chr2:234388200-234402000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr2:234388400-234401800 Strong transcription Brain Inferior Temporal Lobe brain
23 chr2:234388600-234396600 Strong transcription Primary hematopoietic stem cells short term culture blood
24 chr2:234389800-234396800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr2:234389800-234398200 Strong transcription Primary T helper cells fromperipheralblood blood
26 chr2:234390200-234402800 Strong transcription Rectal Mucosa Donor 31 rectum
27 chr2:234390800-234441000 Weak transcription Fetal Brain Male brain
28 chr2:234391200-234404400 Strong transcription Fetal Stomach stomach
29 chr2:234391400-234402600 Strong transcription Skeletal Muscle Male skeletal muscle
30 chr2:234391600-234396400 Weak transcription Rectal Smooth Muscle rectum
31 chr2:234391600-234397200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr2:234391600-234412000 Strong transcription Skeletal Muscle Female skeletal muscle
33 chr2:234391800-234398000 Strong transcription Brain Anterior Caudate brain
34 chr2:234392000-234411600 Weak transcription Fetal Brain Female brain
35 chr2:234392200-234402400 Strong transcription Duodenum Smooth Muscle Duodenum
36 chr2:234392400-234399400 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr2:234392400-234403000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr2:234392800-234397000 Weak transcription Thymus Thymus
39 chr2:234392800-234398200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr2:234392800-234406400 Weak transcription iPS-18 Cell Line embryonic stem cell
41 chr2:234393000-234400800 Weak transcription GM12878-XiMat blood
42 chr2:234393000-234402400 Weak transcription HUES64 Cell Line embryonic stem cell
43 chr2:234393400-234396400 Weak transcription Brain Angular Gyrus brain
44 chr2:234393600-234401000 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr2:234393800-234395800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
46 chr2:234393800-234403200 Strong transcription Primary T cells from cord blood blood
47 chr2:234394000-234396600 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr2:234394000-234403200 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr2:234394200-234402600 Strong transcription Sigmoid Colon Sigmoid Colon
50 chr2:234394400-234395800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015