Variant report

Variant	rs887572
Chromosome Location	chr7:116915143-116915144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1029397	1.00[JPT][hapmap]
rs17139830	1.00[JPT][hapmap]
rs17139859	1.00[JPT][hapmap]
rs17139881	1.00[JPT][hapmap]
rs2228946	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs38913	1.00[CHD][hapmap];0.85[GIH][hapmap]
rs4571678	1.00[JPT][hapmap]
rs6972819	1.00[JPT][hapmap]
rs887574	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989727	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116912200-116915200	Weak transcription	Osteobl	bone
3	chr7:116913200-116915200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:116913200-116915200	Enhancers	HMEC	breast
5	chr7:116913600-116915200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:116913600-116915400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:116914200-116915200	Enhancers	NHEK	skin
8	chr7:116914400-116915400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:116914600-116918000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:116914600-116918200	Weak transcription	Placenta	Placenta
11	chr7:116914800-116915600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:116915000-116915400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:116915000-116915400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:116915000-116915400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:116915000-116915400	Enhancers	NHDF-Ad	bronchial
16	chr7:116915000-116915400	Enhancers	NHLF	lung
17	chr7:116915000-116919600	Strong transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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