Variant report

Variant	rs895908
Chromosome Location	chr14:85717806-85717807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11846871	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1449414	0.83[ASN][1000 genomes]
rs1562696	0.83[ASN][1000 genomes]
rs1667498	0.83[ASN][1000 genomes]
rs1667505	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1767418	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4904241	0.89[EUR][1000 genomes]
rs6574806	0.83[ASN][1000 genomes]
rs6574807	0.86[ASN][1000 genomes]
rs7158452	0.83[ASN][1000 genomes]
rs72687585	0.83[ASN][1000 genomes]
rs8013627	0.86[ASN][1000 genomes]
rs8017958	0.86[ASN][1000 genomes]
rs8017968	0.86[ASN][1000 genomes]
rs9323754	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85709400-85718200	Weak transcription	HSMMtube	muscle
2	chr14:85715200-85719000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:85716000-85718000	Weak transcription	Osteobl	bone
4	chr14:85716000-85718200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:85716000-85718400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:85716000-85718400	Weak transcription	Hela-S3	cervix
7	chr14:85716200-85718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:85716600-85719000	Enhancers	HUVEC	blood vessel
9	chr14:85716800-85718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:85717000-85718000	Weak transcription	NHEK	skin
11	chr14:85717200-85727800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:85717400-85723400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:85717800-85719200	Enhancers	HMEC	breast
14	chr14:85717800-85719800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:85717800-85720600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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