Variant report

Variant	rs1562696
Chromosome Location	chr14:85714684-85714685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11846871	0.94[ASN][1000 genomes]
rs12050312	1.00[CHB][hapmap]
rs12897361	0.81[ASN][1000 genomes]
rs1375570	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1449414	0.88[ASN][1000 genomes]
rs1449415	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1584488	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1625836	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1667498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1667507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1667508	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1667516	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1767389	0.98[EUR][1000 genomes]
rs1767397	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1767398	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1767418	0.88[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2265506	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2584596	0.93[EUR][1000 genomes]
rs2767537	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6574806	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574807	0.97[ASN][1000 genomes]
rs7158452	0.88[ASN][1000 genomes]
rs72687573	0.90[ASN][1000 genomes]
rs72687574	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72687576	0.90[ASN][1000 genomes]
rs72687577	0.90[ASN][1000 genomes]
rs72687585	0.94[ASN][1000 genomes]
rs8013627	0.90[ASN][1000 genomes]
rs8017958	0.91[ASN][1000 genomes]
rs8017968	0.91[ASN][1000 genomes]
rs895908	0.83[ASN][1000 genomes]
rs9323754	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902168	chr14:85693904-85716792	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85701200-85715200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:85706200-85715600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:85708200-85715400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:85708400-85716000	Weak transcription	Ovary	ovary
5	chr14:85709000-85715400	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:85709400-85718200	Weak transcription	HSMMtube	muscle
7	chr14:85713600-85715200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:85713600-85715400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:85714000-85715000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:85714600-85716200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:85714600-85716800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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