Variant report

Variant	rs899983
Chromosome Location	chr3:137801213-137801214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:137800595-137801870	MCF10A-Er-Src	breast:	n/a	chr3:137800849-137800872 chr3:137801530-137801539 chr3:137801529-137801538 chr3:137800948-137800960
2	MAX	chr3:137800562-137801763	SK-N-SH	brain:	n/a	chr3:137801530-137801539
3	JUND	chr3:137801173-137801903	HCT-116	colon:	n/a	chr3:137801528-137801540 chr3:137801528-137801539 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
4	RUNX3	chr3:137801045-137801427	GM12878	blood:	n/a	chr3:137801238-137801247 chr3:137801238-137801247
5	FOSL2	chr3:137800413-137801823	SK-N-SH	brain:	n/a	chr3:137801528-137801540 chr3:137800716-137800723 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
6	GATA3	chr3:137800765-137801821	SK-N-SH	brain:	n/a	chr3:137801281-137801290 chr3:137801280-137801292 chr3:137801281-137801291 chr3:137801278-137801294 chr3:137801278-137801294 chr3:137801281-137801290
7	JUND	chr3:137801188-137801870	MCF-7	breast:	n/a	chr3:137801528-137801540 chr3:137801528-137801539 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
8	RUNX3	chr3:137801093-137801535	GM12878	blood:	n/a	chr3:137801238-137801247 chr3:137801238-137801247
9	SIN3AK20	chr3:137801142-137801867	MCF-7	breast:	n/a	n/a
10	STAT3	chr3:137800613-137801939	MCF10A-Er-Src	breast:	n/a	chr3:137800849-137800872 chr3:137801530-137801539 chr3:137801529-137801538 chr3:137800948-137800960
11	POLR2A	chr3:137800380-137802004	IMR90	lung:	n/a	n/a
12	JUND	chr3:137800401-137801889	SK-N-SH	brain:	n/a	chr3:137801528-137801540 chr3:137801528-137801539 chr3:137800716-137800723 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
13	POLR2A	chr3:137800370-137802008	MCF10A-Er-Src	breast:	n/a	n/a
14	STAT3	chr3:137800761-137801243	MCF10A-Er-Src	breast:	n/a	chr3:137800849-137800872 chr3:137800948-137800960
15	MAX	chr3:137801161-137801863	A549	lung:	n/a	chr3:137801530-137801539
16	MYC	chr3:137800720-137801794	MCF10A-Er-Src	breast:	n/a	chr3:137801530-137801539
17	NR3C1	chr3:137800571-137801291	A549	lung:	n/a	n/a
18	SETDB1	chr3:137801177-137801961	U2OS	brain:	n/a	n/a
19	JUND	chr3:137800370-137801978	SK-N-SH	brain:	n/a	chr3:137801528-137801540 chr3:137801528-137801539 chr3:137800716-137800723 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
20	POLR2A	chr3:137800958-137801596	Hela-S3	cervix:	n/a	n/a
21	FOS	chr3:137800554-137801876	MCF10A-Er-Src	breast:	n/a	chr3:137801528-137801540 chr3:137800716-137800723 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
22	JUND	chr3:137801172-137801810	HCT-116	colon:	n/a	chr3:137801528-137801540 chr3:137801528-137801539 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
23	TCF12	chr3:137800367-137801889	SK-N-SH	brain:	n/a	chr3:137800384-137800391
24	EP300	chr3:137800911-137801276	SK-N-SH_RA	brain:	n/a	n/a
25	FOSL1	chr3:137801207-137801826	HCT-116	colon:	n/a	chr3:137801528-137801540 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
26	FOS	chr3:137800506-137801919	MCF10A-Er-Src	breast:	n/a	chr3:137801528-137801540 chr3:137800716-137800723 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
27	FOS	chr3:137800512-137801944	MCF10A-Er-Src	breast:	n/a	chr3:137801528-137801540 chr3:137800716-137800723 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
28	TCF12	chr3:137800380-137801852	SK-N-SH	brain:	n/a	chr3:137800384-137800391
29	TAF1	chr3:137800879-137801242	SK-N-SH	brain:	n/a	n/a
30	MYC	chr3:137800615-137801869	MCF10A-Er-Src	breast:	n/a	chr3:137801530-137801539
31	FOS	chr3:137800526-137802098	MCF10A-Er-Src	breast:	n/a	chr3:137801528-137801540 chr3:137800716-137800723 chr3:137801529-137801538 chr3:137801530-137801537 chr3:137801530-137801539 chr3:137801530-137801538
32	KAP1	chr3:137800907-137801993	HEK293	kidney:	n/a	chr3:137801531-137801540
33	POLR2A	chr3:137800648-137801656	SK-N-SH	brain:	n/a	n/a
34	MAFK	chr3:137800587-137801648	IMR90	lung:	n/a	chr3:137801530-137801540
35	ZNF263	chr3:137800221-137801919	HEK293-T-REx	kidney:	n/a	chr3:137800326-137800335
36	GATA3	chr3:137800491-137801915	SK-N-SH	brain:	n/a	chr3:137801281-137801290 chr3:137801280-137801292 chr3:137801281-137801291 chr3:137801278-137801294 chr3:137801278-137801294 chr3:137801281-137801290
37	NFIC	chr3:137800384-137801787	SK-N-SH	brain:	n/a	n/a
38	CEBPB	chr3:137800574-137802165	IMR90	lung:	n/a	chr3:137801266-137801278
39	MAZ	chr3:137800315-137802253	IMR90	lung:	n/a	chr3:137801530-137801539 chr3:137802119-137802130
40	POLR2A	chr3:137800853-137801636	MCF10A-Er-Src	breast:	n/a	n/a
41	STAT3	chr3:137800656-137801933	MCF10A-Er-Src	breast:	n/a	chr3:137800849-137800872 chr3:137801530-137801539 chr3:137801529-137801538 chr3:137800948-137800960
42	PBX3	chr3:137800781-137801801	SK-N-SH	brain:	n/a	n/a
43	KAP1	chr3:137800958-137802025	U2OS	brain:	n/a	chr3:137801531-137801540
44	NR3C1	chr3:137800791-137801221	A549	lung:	n/a	n/a
45	MAX	chr3:137800606-137801238	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
DZIP1L	TF binding region

Extended variants
information (count: 118 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1107422	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719358	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13100360	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1351446	0.88[ASN][1000 genomes]
rs1444577	0.83[ASN][1000 genomes]
rs1444578	0.81[ASN][1000 genomes]
rs1545816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1564496	0.85[ASN][1000 genomes]
rs17838821	0.82[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179282	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2170309	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2246945	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2589259	0.83[ASN][1000 genomes]
rs2622697	0.85[ASN][1000 genomes]
rs2622698	0.88[ASN][1000 genomes]
rs2622704	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622706	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622707	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2622710	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2622711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622713	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2622714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622715	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622716	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622718	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2622720	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2622724	0.87[ASN][1000 genomes]
rs2622725	0.87[ASN][1000 genomes]
rs2622726	0.87[ASN][1000 genomes]
rs2622727	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2622728	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2622729	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2622730	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2622746	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2724679	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2724687	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2724693	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2724694	0.97[ASN][1000 genomes]
rs2724695	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2724697	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2724698	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724699	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724700	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724701	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724702	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724703	0.92[ASN][1000 genomes]
rs2724704	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2724707	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2724708	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2724713	0.88[ASN][1000 genomes]
rs2724716	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2724717	0.94[ASN][1000 genomes]
rs2724720	0.87[ASN][1000 genomes]
rs2724721	0.87[ASN][1000 genomes]
rs2724722	0.87[ASN][1000 genomes]
rs2724723	0.87[ASN][1000 genomes]
rs2724729	0.87[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28480035	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs329381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs329382	0.88[ASN][1000 genomes]
rs329383	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs329384	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs329385	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs329388	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs329389	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs329390	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs329391	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs365504	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs367439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs374045	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs382629	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs384828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs389697	0.90[ASN][1000 genomes]
rs390729	0.94[ASN][1000 genomes]
rs405265	0.94[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs405517	0.87[ASN][1000 genomes]
rs405602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs407009	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs419075	0.94[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs425938	0.92[ASN][1000 genomes]
rs436145	0.87[ASN][1000 genomes]
rs442800	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs445025	0.92[ASN][1000 genomes]
rs446644	0.94[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs452195	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs453023	0.94[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4678403	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs618553	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6809258	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7613955	0.94[ASN][1000 genomes]
rs7629243	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7639197	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9812778	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814877	0.88[ASN][1000 genomes]
rs9834462	0.90[ASN][1000 genomes]
rs9834670	0.88[ASN][1000 genomes]
rs9842648	0.89[ASN][1000 genomes]
rs9842918	0.86[ASN][1000 genomes]
rs9857908	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9860229	0.90[ASN][1000 genomes]
rs9860630	0.86[ASN][1000 genomes]
rs9874211	0.81[ASN][1000 genomes]
rs996432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2751978	chr3:137715302-137890750	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1007857	chr3:137767454-137843106	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1008563	chr3:137776151-137801394	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1002136	chr3:137776151-137806500	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv519971	chr3:137782655-137801213	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv522591	chr3:137782655-137801213	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs899983	CLDN18	cis	cerebellum	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137780000-137813400	Weak transcription	HUVEC	blood vessel
2	chr3:137780600-137811600	Weak transcription	Psoas Muscle	Psoas
3	chr3:137781000-137833200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:137783000-137802000	Weak transcription	Fetal Brain Female	brain
5	chr3:137783200-137811600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:137783200-137821200	Weak transcription	Colonic Mucosa	Colon
7	chr3:137785400-137805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:137786000-137802000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:137787600-137806600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:137787800-137802600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:137787800-137805200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:137789800-137803200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:137789800-137803600	Strong transcription	Fetal Lung	lung
14	chr3:137790800-137802400	Weak transcription	Fetal Intestine Large	intestine
15	chr3:137790800-137802800	Weak transcription	Brain Germinal Matrix	brain
16	chr3:137792000-137802000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:137792000-137802800	Weak transcription	Liver	Liver
18	chr3:137792000-137820600	Weak transcription	Esophagus	oesophagus
19	chr3:137792200-137805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:137792400-137818200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:137792600-137802000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:137793600-137801400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:137793800-137803600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr3:137794600-137803400	Strong transcription	Fetal Muscle Leg	muscle
25	chr3:137794600-137803400	Strong transcription	Fetal Stomach	stomach
26	chr3:137795800-137803400	Strong transcription	Aorta	Aorta
27	chr3:137796200-137801600	Weak transcription	Fetal Kidney	kidney
28	chr3:137796200-137801800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:137796200-137802400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:137796200-137803800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:137796200-137811400	Weak transcription	Fetal Brain Male	brain
32	chr3:137796400-137802800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:137796600-137803800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:137796800-137802200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:137796800-137802400	Genic enhancers	HSMM	muscle
36	chr3:137796800-137805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:137797400-137802200	Weak transcription	Fetal Intestine Small	intestine
38	chr3:137797600-137802400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:137798000-137802000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:137798400-137801400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:137798400-137803200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:137798600-137803400	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:137798800-137803200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:137798800-137803800	Strong transcription	Right Ventricle	heart
45	chr3:137799200-137801400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:137799400-137801400	Weak transcription	Left Ventricle	heart
47	chr3:137799400-137801600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:137799400-137803800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:137800000-137802200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:137800000-137803400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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