Variant report

Variant	rs9834670
Chromosome Location	chr3:137780145-137780146
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:137779026..137781498-chr3:137783755..137785265,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1107422	0.88[ASN][1000 genomes]
rs11719358	0.95[ASN][1000 genomes]
rs13100360	0.85[ASN][1000 genomes]
rs1444577	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1444578	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1545816	0.85[ASN][1000 genomes]
rs17838821	0.85[ASN][1000 genomes]
rs179282	0.95[ASN][1000 genomes]
rs1825081	0.82[ASN][1000 genomes]
rs2589259	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2589260	0.85[EUR][1000 genomes]
rs2622704	0.93[ASN][1000 genomes]
rs2622705	0.93[ASN][1000 genomes]
rs2622706	0.93[ASN][1000 genomes]
rs2622707	0.93[ASN][1000 genomes]
rs2622709	0.90[ASN][1000 genomes]
rs2622710	0.90[ASN][1000 genomes]
rs2622711	0.88[ASN][1000 genomes]
rs2622714	0.86[ASN][1000 genomes]
rs2622715	0.86[ASN][1000 genomes]
rs2622716	0.86[ASN][1000 genomes]
rs2622717	0.86[ASN][1000 genomes]
rs2622718	0.86[ASN][1000 genomes]
rs2622719	0.85[ASN][1000 genomes]
rs2622720	0.85[ASN][1000 genomes]
rs2622724	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622725	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622726	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2622727	0.85[ASN][1000 genomes]
rs2622728	0.85[ASN][1000 genomes]
rs2622729	0.85[ASN][1000 genomes]
rs2622730	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2622745	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2724693	0.86[ASN][1000 genomes]
rs2724694	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2724695	0.85[ASN][1000 genomes]
rs2724697	0.90[ASN][1000 genomes]
rs2724698	0.93[ASN][1000 genomes]
rs2724699	0.93[ASN][1000 genomes]
rs2724700	0.93[ASN][1000 genomes]
rs2724701	0.93[ASN][1000 genomes]
rs2724702	0.93[ASN][1000 genomes]
rs2724703	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2724704	0.93[ASN][1000 genomes]
rs2724705	0.93[ASN][1000 genomes]
rs2724706	0.93[ASN][1000 genomes]
rs2724707	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2724708	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2724713	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2724716	0.85[ASN][1000 genomes]
rs2724717	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2724720	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2724721	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2724722	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2724723	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28480035	0.81[ASN][1000 genomes]
rs329381	0.85[ASN][1000 genomes]
rs329382	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs329383	0.84[ASN][1000 genomes]
rs329384	0.85[ASN][1000 genomes]
rs329385	0.85[ASN][1000 genomes]
rs329388	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs329389	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs329390	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs329391	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs365504	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs367439	0.85[ASN][1000 genomes]
rs374045	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs382629	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs384828	0.90[ASN][1000 genomes]
rs389697	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs390729	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs405265	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs405517	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs405602	0.90[ASN][1000 genomes]
rs407009	0.93[ASN][1000 genomes]
rs419075	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs425938	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs436145	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs442800	0.93[ASN][1000 genomes]
rs445025	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs446644	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs452195	0.93[ASN][1000 genomes]
rs453023	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs618553	0.90[ASN][1000 genomes]
rs6809258	0.84[ASN][1000 genomes]
rs7613955	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7629243	0.85[ASN][1000 genomes]
rs7639197	0.86[ASN][1000 genomes]
rs899983	0.88[ASN][1000 genomes]
rs9814877	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842918	0.81[ASN][1000 genomes]
rs996432	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2751978	chr3:137715302-137890750	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1007857	chr3:137767454-137843106	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1008563	chr3:137776151-137801394	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1002136	chr3:137776151-137806500	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137729400-137780400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:137742000-137780200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:137744400-137792000	Weak transcription	Fetal Kidney	kidney
4	chr3:137750000-137781800	Weak transcription	Lung	lung
5	chr3:137750600-137782200	Weak transcription	Fetal Intestine Small	intestine
6	chr3:137754400-137783000	Weak transcription	Stomach Mucosa	stomach
7	chr3:137763000-137780600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:137763000-137797600	Weak transcription	Hela-S3	cervix
9	chr3:137763400-137780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:137763400-137781400	Weak transcription	HSMMtube	muscle
11	chr3:137763400-137782600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:137766200-137781000	Weak transcription	NHEK	skin
13	chr3:137766800-137780400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:137766800-137783600	Weak transcription	Brain Substantia Nigra	brain
15	chr3:137767000-137782800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:137767200-137791800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:137767400-137780400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:137767400-137780400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:137768200-137782800	Weak transcription	Esophagus	oesophagus
20	chr3:137768200-137787600	Weak transcription	A549	lung
21	chr3:137768400-137780400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:137768400-137782200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:137768600-137782200	Weak transcription	Gastric	stomach
24	chr3:137768600-137783600	Weak transcription	Pancreas	Pancrea
25	chr3:137768800-137781000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:137769400-137780400	Weak transcription	NHLF	lung
27	chr3:137769800-137785600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:137770200-137780200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:137770200-137783600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr3:137770400-137781200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:137770400-137783600	Weak transcription	Fetal Lung	lung
32	chr3:137772800-137792200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:137774200-137780800	Weak transcription	NH-A	brain
34	chr3:137775200-137781800	Enhancers	Fetal Heart	heart
35	chr3:137776200-137781000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:137776400-137780600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:137777600-137781200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:137777800-137780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:137777800-137790000	Weak transcription	Brain Germinal Matrix	brain
40	chr3:137778200-137781000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr3:137778200-137781200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:137778200-137781200	Strong transcription	HSMM	muscle
43	chr3:137778200-137782400	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr3:137778200-137800600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:137778400-137781400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:137778400-137787400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:137778600-137787600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:137778800-137781000	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:137778800-137781600	Enhancers	Left Ventricle	heart
50	chr3:137778800-137800400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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