Variant report

Variant	rs903771
Chromosome Location	chr12:117291591-117291592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10047539	0.80[AMR][1000 genomes]
rs10735098	0.89[JPT][hapmap]
rs10774890	0.89[JPT][hapmap]
rs11068204	1.00[YRI][hapmap]
rs11068208	0.90[LWK][hapmap];1.00[YRI][hapmap]
rs2393108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893689	0.89[ASN][1000 genomes]
rs4457847	1.00[ASN][1000 genomes]
rs4767462	0.88[CEU][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs4767463	0.88[CEU][hapmap];0.90[AMR][1000 genomes]
rs4767466	0.90[AMR][1000 genomes]
rs6490095	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs7304747	0.80[CEU][hapmap]
rs903772	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs903773	0.90[AMR][1000 genomes]
rs903774	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs924072	0.89[JPT][hapmap]
rs924075	0.89[JPT][hapmap]
rs924078	0.89[JPT][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117259400-117294400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117263000-117296000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117269600-117291600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:117273800-117296800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:117274400-117291600	Weak transcription	Primary T cells from cord blood	blood
6	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:117276000-117296000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:117276600-117294600	Weak transcription	Primary B cells from cord blood	blood
9	chr12:117276800-117296200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:117287600-117296200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr12:117288800-117293800	Enhancers	Fetal Thymus	thymus
12	chr12:117289000-117294400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:117290200-117296000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:117290200-117296200	Weak transcription	Fetal Brain Female	brain
15	chr12:117290600-117296000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:117290600-117296000	Weak transcription	Brain Germinal Matrix	brain
17	chr12:117290600-117296000	Weak transcription	Fetal Brain Male	brain
18	chr12:117290800-117292200	Enhancers	Thymus	Thymus
19	chr12:117290800-117292200	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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