Variant report

Variant	rs10047539
Chromosome Location	chr12:117276217-117276218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10735096	0.92[CHD][hapmap]
rs10735097	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs10735098	0.89[TSI][hapmap]
rs10774887	0.92[CHD][hapmap]
rs10774889	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs10774890	0.81[TSI][hapmap]
rs10850715	0.92[CHD][hapmap]
rs10850722	0.93[ASN][1000 genomes]
rs10850723	0.93[ASN][1000 genomes]
rs1495931	0.81[ASN][1000 genomes]
rs1495932	0.84[ASN][1000 genomes]
rs1495933	0.81[TSI][hapmap]
rs2393084	0.81[CHD][hapmap]
rs2393088	0.84[ASN][1000 genomes]
rs2393107	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2393108	0.80[AMR][1000 genomes]
rs3926590	0.82[CHD][hapmap]
rs4238048	0.90[ASN][1000 genomes]
rs4432105	0.90[ASN][1000 genomes]
rs4480640	0.84[ASN][1000 genomes]
rs4601884	0.84[ASN][1000 genomes]
rs4766809	0.84[ASN][1000 genomes]
rs4767449	0.92[CHD][hapmap]
rs4767454	0.93[ASN][1000 genomes]
rs4767458	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs4767460	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767462	1.00[ASW][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767463	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4767466	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767470	1.00[CHB][hapmap];0.88[TSI][hapmap];0.84[ASN][1000 genomes]
rs4767471	0.84[ASN][1000 genomes]
rs6490093	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.85[TSI][hapmap];0.93[ASN][1000 genomes]
rs6490095	1.00[ASW][hapmap];0.84[JPT][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6490096	0.84[ASN][1000 genomes]
rs7304747	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.85[TSI][hapmap];0.93[ASN][1000 genomes]
rs730512	0.84[ASN][1000 genomes]
rs7314309	0.92[CHD][hapmap]
rs7314377	1.00[CHB][hapmap]
rs7980144	0.84[CHD][hapmap]
rs903771	0.80[AMR][1000 genomes]
rs903773	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs924078	0.81[TSI][hapmap]
rs987560	0.93[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117257400-117287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:117257800-117276800	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:117258000-117289600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr12:117259400-117294400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:117263000-117296000	Weak transcription	Brain Angular Gyrus	brain
6	chr12:117263600-117284000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:117263800-117289600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:117266000-117276800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:117269600-117291600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:117271600-117276800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:117273400-117280200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:117273800-117296800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr12:117274000-117281800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:117274000-117290800	Weak transcription	Dnd41	blood
15	chr12:117274200-117289800	Weak transcription	Brain Germinal Matrix	brain
16	chr12:117274200-117289800	Weak transcription	Fetal Brain Female	brain
17	chr12:117274200-117290800	Weak transcription	Thymus	Thymus
18	chr12:117274400-117276400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:117274400-117283200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:117274400-117288200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:117274400-117288800	Weak transcription	Fetal Thymus	thymus
22	chr12:117274400-117290200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:117274400-117291600	Weak transcription	Primary T cells from cord blood	blood
24	chr12:117274800-117276800	Enhancers	Adipose Nuclei	Adipose
25	chr12:117275000-117276800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr12:117275200-117279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:117275400-117278800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:117275400-117287000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr12:117276000-117276600	Enhancers	Primary B cells from cord blood	blood
31	chr12:117276000-117277000	Enhancers	Primary B cells from peripheral blood	blood
32	chr12:117276000-117296000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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