Variant report

Variant	rs4767466
Chromosome Location	chr12:117300857-117300858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117211223..117211938-chr12:117300747..117301762,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10047539	1.00[ASW][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1032529	0.81[ASN][1000 genomes]
rs10735097	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10735098	0.84[TSI][hapmap]
rs10774889	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10850722	0.84[ASN][1000 genomes]
rs10850723	0.84[ASN][1000 genomes]
rs1495931	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1495932	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393088	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2393107	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2393108	1.00[CEU][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes]
rs4238048	0.81[ASN][1000 genomes]
rs4432105	1.00[ASN][1000 genomes]
rs4480640	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4601884	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4766809	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4767454	0.84[ASN][1000 genomes]
rs4767458	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4767460	0.82[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs4767462	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767463	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4767470	0.82[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs4767471	0.87[ASN][1000 genomes]
rs6490093	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[ASN][1000 genomes]
rs6490095	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[TSI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6490096	0.87[ASN][1000 genomes]
rs7304747	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[ASN][1000 genomes]
rs730512	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7314377	0.82[CHB][hapmap]
rs7980144	0.81[CHD][hapmap]
rs903771	0.90[AMR][1000 genomes]
rs903773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987560	0.84[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117294600-117302000	Weak transcription	Hela-S3	cervix
2	chr12:117294800-117302400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:117297800-117303000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:117298000-117301200	Weak transcription	Right Ventricle	heart
5	chr12:117298200-117302000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:117298400-117311800	Weak transcription	Right Atrium	heart
7	chr12:117299200-117302200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:117299400-117302200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr12:117299600-117302000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:117299800-117302000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:117299800-117302000	Weak transcription	A549	lung
12	chr12:117299800-117302200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:117300000-117301000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:117300000-117301000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:117300000-117301000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr12:117300000-117301000	Weak transcription	HSMM	muscle
17	chr12:117300000-117301000	Weak transcription	HSMMtube	muscle
18	chr12:117300000-117301000	Weak transcription	NH-A	brain
19	chr12:117300000-117301200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr12:117300000-117302000	Weak transcription	Osteobl	bone
21	chr12:117300000-117302200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:117300000-117302200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:117300000-117303000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:117300000-117305400	Weak transcription	Primary B cells from cord blood	blood
25	chr12:117300000-117314200	Weak transcription	Thymus	Thymus
26	chr12:117300600-117303000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:117300800-117301200	Enhancers	GM12878-XiMat	blood
28	chr12:117300800-117301600	Enhancers	Fetal Thymus	thymus
29	chr12:117300800-117303000	Enhancers	NHDF-Ad	bronchial
30	chr12:117300800-117303000	Enhancers	NHLF	lung

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