Variant report

Variant	rs4767462
Chromosome Location	chr12:117297573-117297574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117255787..117257433-chr12:117297351..117300001,2	K562	blood:
2	chr12:117290976..117294327-chr12:117296336..117299387,3	MCF-7	breast:
3	chr12:117262300..117265228-chr12:117296099..117298850,2	K562	blood:
4	chr12:117288832..117290642-chr12:117297295..117299164,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10047539	1.00[ASW][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1032529	0.81[ASN][1000 genomes]
rs10735096	0.82[CHD][hapmap]
rs10735097	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10735098	0.95[TSI][hapmap]
rs10774887	0.82[CHD][hapmap]
rs10774889	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10850715	0.82[CHD][hapmap]
rs10850722	0.84[ASN][1000 genomes]
rs10850723	0.84[ASN][1000 genomes]
rs1495931	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1495932	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2393088	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2393107	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2393108	0.88[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes]
rs3926590	0.89[CHD][hapmap]
rs4238048	0.81[ASN][1000 genomes]
rs4432105	1.00[ASN][1000 genomes]
rs4480640	0.94[ASN][1000 genomes]
rs4601884	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4766809	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4767449	0.82[CHD][hapmap]
rs4767454	0.84[ASN][1000 genomes]
rs4767458	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4767460	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767463	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4767466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767470	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs4767471	0.87[ASN][1000 genomes]
rs6490093	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6490095	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6490096	0.87[ASN][1000 genomes]
rs7304747	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs730512	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7314309	0.82[CHD][hapmap]
rs7314377	0.82[CHB][hapmap]
rs7980144	0.90[CHD][hapmap]
rs903771	0.90[AMR][1000 genomes]
rs903772	1.00[MEX][hapmap]
rs903773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903774	1.00[MEX][hapmap]
rs924075	0.81[TSI][hapmap]
rs987560	0.84[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr12:117292400-117297800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:117294000-117300000	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:117294600-117297800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr12:117294600-117298600	Weak transcription	Thymus	Thymus
6	chr12:117294600-117302000	Weak transcription	Hela-S3	cervix
7	chr12:117294800-117302400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:117295400-117299200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr12:117296000-117298000	Enhancers	Brain Germinal Matrix	brain
10	chr12:117296000-117299800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:117296000-117300000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:117296200-117297600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:117296200-117297600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:117296200-117298200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr12:117296600-117297800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr12:117296600-117298400	Weak transcription	Primary B cells from cord blood	blood
17	chr12:117296800-117298200	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr12:117296800-117299000	Genic enhancers	Fetal Thymus	thymus
19	chr12:117297000-117297800	Active TSS	Brain Anterior Caudate	brain
20	chr12:117297000-117298600	Enhancers	Spleen	Spleen
21	chr12:117297200-117297600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:117297200-117297600	Enhancers	Fetal Muscle Trunk	muscle
23	chr12:117297200-117297800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr12:117297200-117297800	Enhancers	GM12878-XiMat	blood
25	chr12:117297200-117298200	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr12:117297200-117298600	Enhancers	Adipose Nuclei	Adipose
27	chr12:117297200-117299400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr12:117297400-117297600	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr12:117297400-117297600	Bivalent Enhancer	Osteobl	bone
30	chr12:117297400-117297800	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr12:117297400-117297800	Enhancers	HSMM	muscle
32	chr12:117297400-117298000	Active TSS	Aorta	Aorta
33	chr12:117297400-117298200	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr12:117297400-117298200	Active TSS	Brain Hippocampus Middle	brain
35	chr12:117297400-117298600	Enhancers	HSMMtube	muscle
36	chr12:117297400-117298800	Active TSS	Brain Angular Gyrus	brain
37	chr12:117297400-117299200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr12:117297400-117299800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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