Variant report
| Variant | rs4767471 |
|---|---|
| Chromosome Location | chr12:117329276-117329277 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:117317789..117320538-chr12:117328860..117330988,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135116 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10047539 | 0.84[ASN][1000 genomes] |
| rs1032529 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1495931 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1495932 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2393088 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4432105 | 0.87[ASN][1000 genomes] |
| rs4480640 | 0.87[ASN][1000 genomes] |
| rs4601884 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4766809 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4767460 | 0.84[ASN][1000 genomes] |
| rs4767462 | 0.87[ASN][1000 genomes] |
| rs4767463 | 0.84[ASN][1000 genomes] |
| rs4767466 | 0.87[ASN][1000 genomes] |
| rs4767470 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6490095 | 0.87[ASN][1000 genomes] |
| rs6490096 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs730512 | 0.87[ASN][1000 genomes] |
| rs903773 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832524 | chr12:117314110-117496576 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:117328600-117332800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
