Variant report

Variant	rs4601884
Chromosome Location	chr12:117323744-117323745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10047539	0.84[ASN][1000 genomes]
rs1032529	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1495931	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1495932	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2393088	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4432105	0.87[ASN][1000 genomes]
rs4480640	0.87[ASN][1000 genomes]
rs4766809	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767460	0.84[ASN][1000 genomes]
rs4767462	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4767463	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4767466	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4767470	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767471	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6490095	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6490096	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730512	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs903773	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117322400-117324800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:117322800-117324200	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:117322800-117324800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr12:117323400-117323800	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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