Variant report

Variant	rs9295588
Chromosome Location	chr6:23442168-23442169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13437154	1.00[AMR][1000 genomes]
rs9460892	1.00[AMR][1000 genomes]
rs9466786	1.00[AMR][1000 genomes]
rs9466794	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466804	1.00[AMR][1000 genomes]
rs9466808	1.00[AMR][1000 genomes]
rs9466814	1.00[AMR][1000 genomes]
rs9466817	1.00[AMR][1000 genomes]
rs9466847	1.00[AMR][1000 genomes]
rs9466853	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830607	chr6:23302325-23446497	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23441800-23443000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:23441800-23443600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:23442000-23442400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:23442000-23442600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:23442000-23442600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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