Variant report

Variant	rs9466853
Chromosome Location	chr6:23591657-23591658
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13437154	1.00[AMR][1000 genomes]
rs9295588	1.00[AMR][1000 genomes]
rs9460892	1.00[AMR][1000 genomes]
rs9460909	1.00[AMR][1000 genomes]
rs9466786	1.00[AMR][1000 genomes]
rs9466794	1.00[AMR][1000 genomes]
rs9466804	1.00[AMR][1000 genomes]
rs9466808	1.00[AMR][1000 genomes]
rs9466814	1.00[AMR][1000 genomes]
rs9466817	1.00[AMR][1000 genomes]
rs9466847	1.00[AMR][1000 genomes]
rs9466885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23589600-23592200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:23589600-23592400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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