Variant report

Variant	rs9460909
Chromosome Location	chr6:23657758-23657759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13437154	1.00[AMR][1000 genomes]
rs9460892	1.00[AMR][1000 genomes]
rs9466804	1.00[AMR][1000 genomes]
rs9466808	1.00[AMR][1000 genomes]
rs9466814	1.00[AMR][1000 genomes]
rs9466817	1.00[AMR][1000 genomes]
rs9466847	1.00[AMR][1000 genomes]
rs9466853	1.00[AMR][1000 genomes]
rs9466885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv883478	chr6:23615399-23659465	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv462656	chr6:23629281-23721032	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv601125	chr6:23629281-23721032	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23652200-23659200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:23652600-23659200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:23654200-23660200	Enhancers	Fetal Intestine Large	intestine
4	chr6:23654600-23658000	Enhancers	Fetal Kidney	kidney
5	chr6:23655000-23657800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:23655600-23657800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:23656000-23657800	Enhancers	Fetal Brain Male	brain
8	chr6:23656400-23658000	Enhancers	Fetal Brain Female	brain
9	chr6:23656400-23658000	Enhancers	Fetal Heart	heart
10	chr6:23656600-23660000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:23656800-23658000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:23657000-23657800	Weak transcription	Brain Substantia Nigra	brain
13	chr6:23657000-23659200	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:23657200-23657800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:23657200-23659200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:23657200-23659200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:23657200-23659200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:23657200-23659800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:23657200-23660200	Enhancers	Brain Germinal Matrix	brain
20	chr6:23657400-23657800	Enhancers	Brain Anterior Caudate	brain
21	chr6:23657400-23659000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:23657600-23657800	Enhancers	Fetal Lung	lung
23	chr6:23657600-23659000	Weak transcription	Fetal Intestine Small	intestine
24	chr6:23657600-23659200	Weak transcription	H1 Cell Line	embryonic stem cell

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