Variant report

Variant	rs9466804
Chromosome Location	chr6:23519335-23519336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13437154	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9295588	1.00[AMR][1000 genomes]
rs9460892	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9460909	1.00[AMR][1000 genomes]
rs9466786	1.00[AMR][1000 genomes]
rs9466794	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466814	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466817	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466847	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466853	1.00[AMR][1000 genomes]
rs9466885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23515600-23523200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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