Variant report

Variant	rs9466817
Chromosome Location	chr6:23559974-23559975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13437154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9295588	1.00[AMR][1000 genomes]
rs9460892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9460909	1.00[AMR][1000 genomes]
rs9466786	1.00[AMR][1000 genomes]
rs9466794	1.00[AMR][1000 genomes]
rs9466804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466808	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9466853	1.00[AMR][1000 genomes]
rs9466885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23559200-23560400	Enhancers	Fetal Intestine Small	intestine
2	chr6:23559200-23560800	Enhancers	Fetal Intestine Large	intestine
3	chr6:23559600-23560000	Enhancers	Liver	Liver
4	chr6:23559800-23560200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr6:23559800-23560600	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:23559800-23560600	Enhancers	HepG2	liver
7	chr6:23559800-23560800	Enhancers	Colonic Mucosa	Colon
8	chr6:23559800-23560800	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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