Variant report

Variant	rs9466885
Chromosome Location	chr6:23654195-23654196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:23652837..23654514-chr6:23729115..23730862,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13437154	1.00[AMR][1000 genomes]
rs9460892	1.00[AMR][1000 genomes]
rs9460909	1.00[AMR][1000 genomes]
rs9466804	1.00[AMR][1000 genomes]
rs9466808	1.00[AMR][1000 genomes]
rs9466814	1.00[AMR][1000 genomes]
rs9466817	1.00[AMR][1000 genomes]
rs9466847	1.00[AMR][1000 genomes]
rs9466853	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv883478	chr6:23615399-23659465	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv462656	chr6:23629281-23721032	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv601125	chr6:23629281-23721032	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23651000-23655800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:23651200-23656400	Weak transcription	Fetal Brain Female	brain
3	chr6:23651400-23654800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:23651600-23655400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:23652200-23659200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:23652400-23654600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:23652400-23655800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:23652400-23656000	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:23652600-23655800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:23652600-23655800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:23652600-23659200	Weak transcription	Brain Angular Gyrus	brain
12	chr6:23652800-23655000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:23652800-23655600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:23652800-23656400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:23653000-23656400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:23653400-23654200	Enhancers	Small Intestine	intestine
17	chr6:23653600-23654400	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:23653600-23655400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:23653800-23655400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:23654000-23657600	Enhancers	Fetal Intestine Small	intestine

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