Variant report

Variant	rs9301907
Chromosome Location	chr13:94426655-94426656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94422038..94423634-chr13:94425606..94427255,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12867691	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12876757	0.83[GIH][hapmap];0.95[MEX][hapmap]
rs1330464	0.89[GIH][hapmap]
rs17189180	0.82[CEU][hapmap]
rs1933787	0.82[CEU][hapmap];0.81[ASN][1000 genomes]
rs28725262	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892667	0.82[CEU][hapmap]
rs4572256	0.80[CEU][hapmap];0.81[ASN][1000 genomes]
rs6416428	0.83[JPT][hapmap]
rs67112141	0.93[EUR][1000 genomes]
rs7987573	0.82[CEU][hapmap];0.84[ASN][1000 genomes]
rs7991274	0.82[CEU][hapmap]
rs9516283	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516284	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524157	0.83[GIH][hapmap];0.94[MEX][hapmap]
rs9524181	0.81[ASN][1000 genomes]
rs9524182	0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs9524191	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524193	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524198	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524203	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524256	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9524276	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1130	chr13:94410849-94455628	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94416600-94429000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94420600-94429000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:94420800-94427600	Weak transcription	A549	lung
4	chr13:94421400-94428000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:94423200-94427400	Weak transcription	HepG2	liver
6	chr13:94423600-94429000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:94423600-94429000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:94423600-94430000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:94423800-94427600	Weak transcription	Fetal Stomach	stomach
10	chr13:94423800-94429000	Weak transcription	Ovary	ovary
11	chr13:94424400-94427400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:94424400-94427600	Weak transcription	HSMM	muscle
13	chr13:94424600-94426800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr13:94424600-94427000	Weak transcription	NH-A	brain
15	chr13:94424600-94427400	Weak transcription	Osteobl	bone
16	chr13:94424800-94427200	Weak transcription	Liver	Liver
17	chr13:94425400-94427800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:94426400-94429600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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