Variant report

Variant	rs9524276
Chromosome Location	chr13:94561232-94561233
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11617930	0.83[CHB][hapmap]
rs12876318	0.84[CHB][hapmap]
rs1330464	0.85[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1411510	0.83[CHB][hapmap]
rs1411513	0.89[CHB][hapmap]
rs2183426	0.84[CHB][hapmap]
rs2183430	0.89[CHB][hapmap]
rs3759422	0.83[CHB][hapmap]
rs3759423	0.83[CHB][hapmap]
rs4274304	0.84[CHB][hapmap]
rs4486746	0.83[CHB][hapmap]
rs67112141	0.81[AMR][1000 genomes]
rs7317037	0.84[CHB][hapmap]
rs7317144	0.83[CHB][hapmap]
rs7320571	0.83[CHB][hapmap]
rs885192	0.83[CHB][hapmap]
rs9301907	0.81[CEU][hapmap]
rs9516286	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs9516289	0.84[CHB][hapmap]
rs9524193	0.90[CEU][hapmap]
rs9524217	0.84[CHB][hapmap]
rs9524249	0.89[CHB][hapmap]
rs9524256	0.82[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes]
rs9524263	0.94[CHB][hapmap]
rs9556326	0.84[CHB][hapmap]
rs9556328	0.83[CHB][hapmap]
rs9556334	0.89[CHB][hapmap]
rs9561444	0.83[CHB][hapmap]
rs9561448	0.84[CHB][hapmap]
rs9561449	0.84[CHB][hapmap]
rs9561458	0.89[CHB][hapmap]
rs9589837	0.84[CHB][hapmap]
rs996921	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94560400-94562600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:94561000-94561800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:94561000-94572600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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