Variant report

Variant	rs9524256
Chromosome Location	chr13:94501761-94501762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93900851..93901407-chr13:94501304..94502189,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11617930	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12867691	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12876318	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1330464	0.89[CHB][hapmap]
rs1411509	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1411510	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1411513	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17189180	0.82[CEU][hapmap]
rs1854730	0.89[ASN][1000 genomes]
rs1933787	0.82[CEU][hapmap]
rs1983988	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2008059	0.89[ASN][1000 genomes]
rs2183426	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2183430	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2210110	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28725262	0.87[EUR][1000 genomes]
rs2892666	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2892667	0.82[CEU][hapmap]
rs3759422	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3759423	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3864992	0.87[ASN][1000 genomes]
rs3864993	0.89[ASN][1000 genomes]
rs3864994	0.89[ASN][1000 genomes]
rs4274304	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4274305	0.89[ASN][1000 genomes]
rs4300503	0.89[ASN][1000 genomes]
rs4486746	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4548731	0.89[ASN][1000 genomes]
rs4556669	0.89[ASN][1000 genomes]
rs4572256	0.81[CEU][hapmap]
rs6416428	0.80[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs67112141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71207436	0.89[ASN][1000 genomes]
rs7317037	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7317144	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7320571	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7329113	0.86[ASN][1000 genomes]
rs7987573	0.82[CEU][hapmap]
rs7988628	0.80[CEU][hapmap]
rs7991274	0.82[CEU][hapmap]
rs885192	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9301907	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9301912	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9516283	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9516284	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9516286	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9516287	0.88[ASN][1000 genomes]
rs9516289	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9516290	0.86[ASN][1000 genomes]
rs9524191	0.85[EUR][1000 genomes]
rs9524193	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs9524198	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9524203	0.87[EUR][1000 genomes]
rs9524212	0.86[ASN][1000 genomes]
rs9524214	0.88[ASN][1000 genomes]
rs9524215	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9524216	0.89[ASN][1000 genomes]
rs9524217	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9524218	0.89[ASN][1000 genomes]
rs9524222	0.89[ASN][1000 genomes]
rs9524223	0.89[ASN][1000 genomes]
rs9524224	0.89[ASN][1000 genomes]
rs9524225	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9524231	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9524236	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9524243	0.93[ASN][1000 genomes]
rs9524247	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9524249	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9524263	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9524276	0.82[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes]
rs9556324	0.86[ASN][1000 genomes]
rs9556325	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9556326	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9556327	0.80[ASN][1000 genomes]
rs9556328	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9556334	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9561444	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9561445	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9561447	0.89[ASN][1000 genomes]
rs9561448	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9561449	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9561458	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9589836	0.89[ASN][1000 genomes]
rs9589837	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9589842	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs991597	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs996921	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430598	chr13:94490519-94546599	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94496600-94503600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94500200-94509400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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