Variant report

Variant	rs9324988
Chromosome Location	chr5:145072132-145072133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10053951	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10054020	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10056068	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062505	0.89[ASN][1000 genomes]
rs10477284	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13435950	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1347160	0.86[AMR][1000 genomes]
rs1347161	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1368435	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1594676	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs17103583	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17103632	0.93[EUR][1000 genomes]
rs1897582	0.80[ASN][1000 genomes]
rs2195938	0.80[ASN][1000 genomes]
rs4339405	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.80[ASN][1000 genomes]
rs4509079	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4579305	0.80[ASN][1000 genomes]
rs59699846	0.89[ASN][1000 genomes]
rs62392286	0.83[AMR][1000 genomes]
rs62392290	0.82[ASN][1000 genomes]
rs62392301	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6580381	0.82[AMR][1000 genomes]
rs6863005	0.80[ASN][1000 genomes]
rs6872440	0.81[ASN][1000 genomes]
rs6876768	0.80[ASN][1000 genomes]
rs6881485	0.80[ASN][1000 genomes]
rs6883434	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6883831	0.80[ASN][1000 genomes]
rs6884613	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6892552	0.80[AMR][1000 genomes]
rs73313747	0.80[ASN][1000 genomes]
rs73313748	0.80[ASN][1000 genomes]
rs73313774	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7711332	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7720071	0.82[AMR][1000 genomes]
rs7733723	0.84[AMR][1000 genomes]
rs9324986	0.86[AMR][1000 genomes]
rs972351	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:145069400-145076800	Weak transcription	Brain Angular Gyrus	brain

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