Variant report

Variant	rs1368435
Chromosome Location	chr5:145070320-145070321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10053951	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10054020	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10056068	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10062505	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477284	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11948853	0.80[AMR][1000 genomes]
rs13435950	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1347160	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1347161	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1433039	0.80[AMR][1000 genomes]
rs17103583	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1897582	0.84[ASN][1000 genomes]
rs2195938	0.84[ASN][1000 genomes]
rs4339405	0.84[ASN][1000 genomes]
rs4509079	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4579305	0.84[ASN][1000 genomes]
rs59699846	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62392286	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62392290	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62392301	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580381	0.82[AMR][1000 genomes]
rs6863005	0.84[ASN][1000 genomes]
rs6872440	0.85[ASN][1000 genomes]
rs6876768	0.84[ASN][1000 genomes]
rs6876787	0.83[ASN][1000 genomes]
rs6881485	0.84[ASN][1000 genomes]
rs6883434	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6883831	0.84[ASN][1000 genomes]
rs6884613	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6892552	0.81[AMR][1000 genomes]
rs73302055	0.83[AMR][1000 genomes]
rs73313747	0.84[ASN][1000 genomes]
rs73313748	0.84[ASN][1000 genomes]
rs73313774	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73794410	0.86[AMR][1000 genomes]
rs7711332	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7720071	0.82[AMR][1000 genomes]
rs7733723	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9324986	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9324988	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972351	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:145067600-145070600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:145068000-145070400	Enhancers	Brain Substantia Nigra	brain
8	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:145069400-145070600	Enhancers	Brain Hippocampus Middle	brain
10	chr5:145069400-145076800	Weak transcription	Brain Angular Gyrus	brain
11	chr5:145070000-145070800	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links