Variant report

Variant	rs11948853
Chromosome Location	chr5:145062940-145062941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145061483..145063897-chr5:145191937..145194920,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10053951	0.87[AMR][1000 genomes]
rs10054020	0.87[AMR][1000 genomes]
rs10062505	0.83[AMR][1000 genomes]
rs10064040	0.90[ASN][1000 genomes]
rs10477284	0.87[AMR][1000 genomes]
rs10515552	0.94[ASN][1000 genomes]
rs10515554	0.94[ASN][1000 genomes]
rs10515557	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435950	0.88[AMR][1000 genomes]
rs1347160	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1347161	0.91[AMR][1000 genomes]
rs1368435	0.80[AMR][1000 genomes]
rs1433035	0.83[ASN][1000 genomes]
rs1433039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529705	0.97[ASN][1000 genomes]
rs1560685	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594676	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs17103568	0.94[ASN][1000 genomes]
rs17103583	0.91[AMR][1000 genomes]
rs17103584	0.94[ASN][1000 genomes]
rs17103587	0.97[ASN][1000 genomes]
rs17103591	0.97[ASN][1000 genomes]
rs17103595	0.97[ASN][1000 genomes]
rs17103600	0.97[ASN][1000 genomes]
rs17103601	0.97[ASN][1000 genomes]
rs17103610	0.97[ASN][1000 genomes]
rs17103621	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103624	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103632	0.92[ASN][1000 genomes]
rs17103639	0.84[ASN][1000 genomes]
rs1865011	0.82[AMR][1000 genomes]
rs1982071	0.81[AMR][1000 genomes]
rs2195938	0.84[AMR][1000 genomes]
rs2195939	0.83[ASN][1000 genomes]
rs28429609	0.85[AMR][1000 genomes]
rs4339405	0.82[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.80[MEX][hapmap]
rs4509079	0.91[AMR][1000 genomes]
rs57531568	0.89[ASN][1000 genomes]
rs60101315	0.82[AMR][1000 genomes]
rs61119648	0.87[ASN][1000 genomes]
rs61352712	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62392286	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62392290	0.84[AMR][1000 genomes]
rs62392301	0.81[ASN][1000 genomes]
rs62392303	0.95[ASN][1000 genomes]
rs62392311	0.95[ASN][1000 genomes]
rs62392313	0.92[ASN][1000 genomes]
rs62394213	0.82[AMR][1000 genomes]
rs6580381	0.84[AMR][1000 genomes]
rs6862768	0.83[ASN][1000 genomes]
rs6872440	0.81[AMR][1000 genomes]
rs6876768	0.81[AMR][1000 genomes]
rs6876787	0.81[AMR][1000 genomes]
rs6881485	0.85[AMR][1000 genomes]
rs6883434	0.84[AMR][1000 genomes]
rs6884613	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6892552	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73302055	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313747	0.84[AMR][1000 genomes]
rs73313748	0.84[AMR][1000 genomes]
rs73313774	0.87[AMR][1000 genomes]
rs73794410	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794411	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449409	0.97[ASN][1000 genomes]
rs7711332	0.90[AMR][1000 genomes]
rs7720071	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7722597	0.94[ASN][1000 genomes]
rs7733723	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9324986	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs956178	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145062000-145063000	Weak transcription	K562	blood
5	chr5:145062000-145069200	Weak transcription	HepG2	liver
6	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum

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