Variant report

Variant	rs73302055
Chromosome Location	chr5:145068869-145068870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145050661..145052911-chr5:145067099..145069500,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10064040	0.90[ASN][1000 genomes]
rs10515552	0.94[ASN][1000 genomes]
rs10515554	0.94[ASN][1000 genomes]
rs10515557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948853	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347160	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1347161	0.80[AMR][1000 genomes]
rs1368435	0.83[AMR][1000 genomes]
rs1433035	0.83[ASN][1000 genomes]
rs1433039	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529705	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1560685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103568	0.94[ASN][1000 genomes]
rs17103583	0.80[AMR][1000 genomes]
rs17103584	0.94[ASN][1000 genomes]
rs17103587	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103591	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103595	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103600	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103601	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103610	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103621	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103624	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103632	0.92[ASN][1000 genomes]
rs17103639	0.84[ASN][1000 genomes]
rs2195939	0.83[ASN][1000 genomes]
rs4509079	0.80[AMR][1000 genomes]
rs57531568	0.89[ASN][1000 genomes]
rs61119648	0.87[ASN][1000 genomes]
rs61352712	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62392286	0.84[ASN][1000 genomes]
rs62392301	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62392303	0.95[ASN][1000 genomes]
rs62392311	0.95[ASN][1000 genomes]
rs62392313	0.92[ASN][1000 genomes]
rs6862768	0.83[ASN][1000 genomes]
rs6884613	0.81[ASN][1000 genomes]
rs6892552	0.83[ASN][1000 genomes]
rs73794410	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794411	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449409	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7720071	0.87[ASN][1000 genomes]
rs7722597	0.94[ASN][1000 genomes]
rs7733723	0.94[ASN][1000 genomes]
rs9324986	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs956178	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2195743	chr5:145068869-145068870	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145062000-145069200	Weak transcription	HepG2	liver
5	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:145067600-145070600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:145068000-145070400	Enhancers	Brain Substantia Nigra	brain
9	chr5:145068200-145069400	Enhancers	Brain Angular Gyrus	brain
10	chr5:145068400-145069000	Enhancers	Brain Hippocampus Middle	brain
11	chr5:145068400-145069400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:145068400-145070000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr5:145068400-145070200	Enhancers	Brain Cingulate Gyrus	brain
14	chr5:145068600-145069200	Enhancers	GM12878-XiMat	blood
15	chr5:145068600-145069400	Enhancers	Primary B cells from peripheral blood	blood
16	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr5:145068800-145069000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr5:145068800-145069400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links