Variant report

Variant	rs10515554
Chromosome Location	chr5:145039220-145039221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145038332..145039901-chr5:145043658..145046555,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10054020	0.81[ASN][1000 genomes]
rs10062505	0.81[ASN][1000 genomes]
rs10064040	0.97[ASN][1000 genomes]
rs10515552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515557	0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11948853	0.94[ASN][1000 genomes]
rs1347160	1.00[ASN][1000 genomes]
rs1422651	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1433030	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1433032	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1433035	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1433039	0.97[ASN][1000 genomes]
rs1529705	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529709	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1560685	0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1594674	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1594675	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1594676	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs17103398	0.84[AMR][1000 genomes]
rs17103431	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103444	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103458	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103460	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103471	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103502	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17103568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103583	0.83[ASN][1000 genomes]
rs17103584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103587	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103591	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103595	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103600	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103601	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103610	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103621	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17103624	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17103632	0.86[ASN][1000 genomes]
rs17103639	0.84[AMR][1000 genomes]
rs1897582	0.82[AMR][1000 genomes]
rs1982070	1.00[EUR][1000 genomes]
rs2116816	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2195938	0.97[EUR][1000 genomes]
rs2195939	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4339405	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs4579305	0.85[AMR][1000 genomes]
rs57427089	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57531568	0.98[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59004463	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59699846	0.81[ASN][1000 genomes]
rs60633209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61119648	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61352712	0.98[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61369168	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62392286	0.90[ASN][1000 genomes]
rs62392303	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62392311	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62392312	0.89[AMR][1000 genomes]
rs62392313	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62394188	0.82[AMR][1000 genomes]
rs62394197	0.81[AMR][1000 genomes]
rs62394217	0.82[AMR][1000 genomes]
rs62394219	0.86[AMR][1000 genomes]
rs6862768	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6863005	0.82[AMR][1000 genomes]
rs6879415	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880648	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883434	0.81[ASN][1000 genomes]
rs6883831	0.86[AMR][1000 genomes]
rs6892552	0.89[ASN][1000 genomes]
rs73302055	0.94[ASN][1000 genomes]
rs73313747	0.97[EUR][1000 genomes]
rs73313748	0.97[EUR][1000 genomes]
rs73794410	0.94[ASN][1000 genomes]
rs73794411	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7449409	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7711332	0.81[ASN][1000 genomes]
rs7720071	0.94[ASN][1000 genomes]
rs7722597	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733723	1.00[ASN][1000 genomes]
rs9324986	0.97[ASN][1000 genomes]
rs953408	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs956178	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs964922	0.81[AMR][1000 genomes]
rs964924	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026800-145041000	Weak transcription	Ovary	ovary
2	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
3	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:145034200-145046400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:145037000-145041200	Weak transcription	Aorta	Aorta
6	chr5:145037600-145040600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:145039000-145042200	Enhancers	Fetal Brain Female	brain

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