Variant report

Variant	rs6883434
Chromosome Location	chr5:145039897-145039898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145038332..145039901-chr5:145043658..145046555,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10036555	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10053951	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10054020	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056068	0.89[ASN][1000 genomes]
rs10062505	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062780	0.88[EUR][1000 genomes]
rs10064040	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10064198	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10066886	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10074155	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10074645	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10074797	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10477284	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10515551	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10515552	0.81[ASN][1000 genomes]
rs10515554	0.81[ASN][1000 genomes]
rs11948853	0.84[AMR][1000 genomes]
rs11953390	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13353880	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13359453	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13361864	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13435950	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1347160	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1347161	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1363555	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1368435	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1433029	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1433031	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1433033	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1433034	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1433035	0.86[EUR][1000 genomes]
rs1433039	0.84[AMR][1000 genomes]
rs1594673	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1594676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17103424	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17103425	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17103568	0.81[ASN][1000 genomes]
rs17103583	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17103584	0.81[ASN][1000 genomes]
rs1865005	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1865009	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1865010	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1865011	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1897582	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1982071	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2099326	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2195937	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2195938	0.91[ASN][1000 genomes]
rs28429609	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28883046	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35784567	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4339405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4509079	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4579305	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4598024	0.86[EUR][1000 genomes]
rs56839506	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57226270	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59699846	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60101315	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62392286	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62392290	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62392301	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62394188	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394190	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394192	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394193	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394194	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394195	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394196	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394197	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62394213	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394216	0.86[EUR][1000 genomes]
rs62394217	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62394219	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6580381	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6863005	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6872440	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6875249	0.87[EUR][1000 genomes]
rs6876768	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6876787	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6881485	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6883831	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6884591	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6884613	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6889689	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6892552	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73311527	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73313747	0.91[ASN][1000 genomes]
rs73313748	0.91[ASN][1000 genomes]
rs73313774	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7711332	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712910	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7720071	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7722597	0.81[ASN][1000 genomes]
rs7733723	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9324986	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9324988	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs953421	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs953422	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs972351	0.87[ASN][1000 genomes]
rs9885537	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026800-145041000	Weak transcription	Ovary	ovary
2	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
3	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:145034200-145046400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:145037000-145041200	Weak transcription	Aorta	Aorta
6	chr5:145037600-145040600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:145039000-145042200	Enhancers	Fetal Brain Female	brain
8	chr5:145039600-145042000	Enhancers	Fetal Brain Male	brain
9	chr5:145039600-145042400	Enhancers	Fetal Lung	lung
10	chr5:145039800-145042400	Enhancers	Fetal Stomach	stomach

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